- Transcript BART1_0-u03305.002
- Transcript IDBART1_0-u03305.002
- Gene IDBART1_0-u03305
Barley RTD
Exon Structure of BART1_0-u03305.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 366830576 | 366830089 | - |
| chr1H | 2 | 366831202 | 366831022 | - |
| chr1H | 3 | 366832334 | 366831277 | - |
| chr1H | 4 | 366833032 | 366832797 | - |
| chr1H | 5 | 366833689 | 366833557 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.93809 | 5.48907 | 4.05893 |
| morex | ETI | 1.57592 | 1.03217 | 1.22977 |
| morex | LEA | 1.41731 | 0 | 5.29588 |
| morex | EPI | 0.801386 | 1.15777 | 1.82119 |
| morex | ROO | 0.791464 | 16.3343 | 0.757007 |
| morex | ROO2 | 0.972689 | 0.46102 | 0.749947 |
| morex | NOD | 18.2827 | 1.67547 | 1.9971 |
| morex | RAC | 0.894651 | 0.73462 | 1.4796 |
| morex | INF1 | 24.0252 | 12.1809 | 8.8118 |
| morex | INF2 | 6.96216 | 7.73236 | 18.5027 |
| morex | CAR5 | 18.5627 | 20.44 | 15.4714 |
| morex | CAR15 | 1.55605 | 0 | 0 |
| morex | LEM | 0.75346 | 1.75083 | 1.02817 |
| morex | LOD | 0 | 0.510945 | 0 |
| morex | PAL | 1.21032 | 0.906149 | 2.37075 |
| morex | SEN | 1.25983 | 0.583431 | 0.594674 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g38950.1 | +1 | 2e-104 | 315 | 148/160 (93%) | protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
| TAIR PP10 | AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR |
+1 | 7e-96 | 290 | 130/160 (81%) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 |
| BRACH PP3 | Bradi3g32000.1.p | +1 | 3e-108 | 322 | 153/160 (96%) | pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2096 bp)
>BART1_0-u03305.002 2096 150831_barley_pseudomolecules CAGCGCGGCTGTTAGCTCGGATACAGGAGAGGAGGTTGCGATCAAGAAGATTGGAAATGC GTTTGACAACCACATCGACGCCAAACGGACGCTTAGAGAAATAAAGCTTCTTCGCCACAT GGACCATGAGAATTTTTACTGTTGACGGGCTTTGTTGTCCACTCGTGCTCACACTGTCAG GCATTCCTATGATGGGTTTATTCTGATAGTGGTTTCAAAATTGGATCACAGATTCTTGCC ATGAAGGATTTAATACGCCCCCCAAGAAGAGATGATTTTAAGGATGTGTACATTGTTACT GAGTTGATGGACACTGATCTCCATCAGATCATTCGCTCAAATCAATCATTGACTGATGAC CATTGCCAGTACTTCTTGTATCAATTGCTTCGAGGGCTAAAATATGTGCACTCAGCAAAT GTCTTGCACCGTGATCTGAAGCCAAGCAATTTGTTCCTAAACGCAAATTGCGATCTCAAG ATTGCTGACTTTGGGCTTGCAAGGACCACTTCAGAAACTGATCTCATGACAGAGTATGTG GTCACTCGTTGGTACCGAGCGCCAGAGTTGCTGTTGAACTGTTCACAATATACTGCTGCT ATTGATGTCTGGTCAGTTGGGTGCATACTTGGTGAAATTATTACTCGTCAACCCCTGTTT CCTGGAAGAGATTACATCCAACAGTTAAAGTTAATCACCGAGGTAGGTTTGTTCAACTCG TCGCCTGCCTTTTTTGGTATCCACATTGACAAGTCATGTGTTGTCTATTTGGAAGCTGTC AATCAATGAAAATGGGTCTGTTTATGAACTTCTTTAATAGAATTTGACAATTGTTCTATT TGGAACAATAGGATAATGGGATCTTTCTTGGCACATCTAACTGTATTGTTAGACCTGTTT CGCATCTTGTGTTTGAATAGAAGTTTTTACTTTTACACAAACACTGGATTAGTGAATGCA TTTTGCATCTGGTAGCATGTAGGTACGGCAACATTTTACTGTATCATCAGATATGGGATC CACATTTGGATTATTAACTTCGTGCAAGTTTCTGTGGATGTCTCTTCTCTTCAAAGTATA CATTTTACTATATATACTGGTTGGTTTCTGCGCAATACATTCTTAGCTTCAAATCAACCA TTTTTAGTACCATCGAAGGCATTTTTGCTTCTTTTTTAATGATGTCTCTTGAACCTGTTG TATCAAATATTAACCAGTCCTTTCCGGCATTCTGCTTCAAAAGCTGATAGGATCACCAGA TGATTCAAGCCTGGGATTTCTTCGGAGTGATAATGCACGAAGATACATGAAGCAATTACC ACAGTACCCAAGGCAGGACTTCCGCCTGCGCTTCCGCAACATGTCTGATGGTGCAGTTGA TCTGTTAGAGAGGATGCTGGTGTTTGACCCAAGCAGACGCATTACTGTTGATGAGGCTCT GCATCACCCATACTTGGCTTCTCTTCATGACATCAATGAAGAACCCACTTGCCCGGCACC TTTCAGCTTTGATTTTGAGCAACCATCTTTTACAGAAGAACATATGAAAGAGCTCATCTG GAGGGAAACTTTAGCATTTAACCCTGATCCGCCCTACTAAGAGCCAAGATTGTTTCCAGG CATTCAAGTTAATTCATGTTGTTTTCCTTGGGAGCACAGACCAAATTACCAGCTGAGGGC ATTGAAGATCTACCTCTAGCTCTAGTGAAGCCGATATTTCCATGTCTTGTGCATCTATTT ATTTTATGCTCGCTTATTGGGCGAATGGGCATGGATTATTTGTTGCTGTAACTATTTCTT TTGTGGCCTTTCTGAAGAAACGACATTTGTATGAGATGGCTTGTATTATACCGGTTGATT GAATAAACTGGTCTTGTGTATCTAAAGCTTGTAATTTTGTGTACACTTATCTAAACATCC CATGTATATCTGAGTTAACATATTCCCTTTTATTATCTCAAGCATGTAATTTGGCATTTT GTGATCGGTCGTATCGAAGTTGCCGATATAATTTCGCTCTGAAATTCAGTTCACTGGTAG GTGTATCCCACATTAAAAGTTTGTACATGCTATTCTATGTATTACTTACTCCGNNN
Protein Sequence (182 aa)
>BART1_0-u03305.002 182 150831_barley_pseudomolecules MKDLIRPPRRDDFKDVYIVTELMDTDLHQIIRSNQSLTDDHCQYFLYQLLRGLKYVHSAN VLHRDLKPSNLFLNANCDLKIADFGLARTTSETDLMTEYVVTRWYRAPELLLNCSQYTAA IDVWSVGCILGEIITRQPLFPGRDYIQQLKLITEVGLFNSSPAFFGIHIDKSCVVYLEAV NQ