- Transcript BART1_0-u02930.004
- Transcript IDBART1_0-u02930.004
- Gene IDBART1_0-u02930
Barley RTD
Exon Structure of BART1_0-u02930.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 320542554 | 320542413 | + |
| chr1H | 2 | 320542741 | 320542688 | + |
| chr1H | 3 | 320543336 | 320543220 | + |
| chr1H | 4 | 320544351 | 320543729 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.42104 | 1.83489 | 1.20096 |
| morex | ETI | 2.49943 | 2.58221 | 6.2201 |
| morex | LEA | 0.89781 | 5.31437 | 6.03129 |
| morex | EPI | 9.38656 | 5.67508 | 8.04961 |
| morex | ROO | 0 | 1.61038 | 1.74961 |
| morex | ROO2 | 0.194389 | 0.680029 | 0.868702 |
| morex | NOD | 8.90449 | 1.16826 | 2.43292 |
| morex | RAC | 1.07519 | 0.559174 | 1.7412 |
| morex | INF1 | 1.90056 | 6.80622 | 8.18745 |
| morex | INF2 | 10.3511 | 5.86218 | 9.23893 |
| morex | CAR5 | 0.685287 | 2.37201 | 0.847193 |
| morex | CAR15 | 1.59125 | 2.37606 | 2.69007 |
| morex | LEM | 1.08592 | 2.94687 | 1.01748 |
| morex | LOD | 2.81884 | 0.866379 | 1.80056 |
| morex | PAL | 0.345727 | 0.40436 | 1.93207 |
| morex | SEN | 3.0806 | 1.50035 | 0.55483 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g29740.1.p | +2 | 1e-33 | 120 | 64/71 (90%) | pacid=32815221 transcript=Bradi3g29740.1 locus=Bradi3g29740 ID=Bradi3g29740.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (936 bp)
>BART1_0-u02930.004 936 150831_barley_pseudomolecules CCGCGCACGCGACGCCTGAAGCGAGGAGAGGAGAGAGGGAGCCGGTGAAGCGCGCGGCGA GCGGAGGCAGAGGGAGGGGCGCCGCGTTCGCCCGGTGGGAGAAGCGATGTCGTCCATCGG CTCCTCCAACATCGGCTTCCAGCTGCTGAAGAAGTCCGGGTGGAAGGAGGGCACCGGCCT CGGTGCGCAGGAGCAGGGGCGGTTGGAGCCAGTAGAGACTCGTGTCAAGAATAACAAGCG TGGTTTAGGTTCCAAAGAACCAAAGCCCAAGGCTGAGGATGATGTTGAAACGGCTCCTAG TAAAAGGCCCAAGCCTCCATATTTGCCGTTTGGGGGACAACATTTGGAGCGCATTCCATA TGACAGTTGTGTGGGGCGCGAAGAAAACTTCACGTGGCCCCCACCTCATGCAGGGTGGCA GGGAAATTGGGGGAAAAGGATGTCCCATTGACAAATAGGTCCCATGACATGGAGCGGCTA AATATGGCGACTCTGACCGCCAATATGGAGTACTAATATTGTTGTGTCCATTGTGCATTT CTGCGTCTAGAAGACTCGAACCAGCTTACCTGTAGTTATCTAACGTGATGTCACAAATAT GTTGCTATTGTCAGCAGAACCCGCCGTCAACGAAGAAGGCAAAGCTGGCCGCAAAGAGGA TACGAAAGATGCAGGAAGAGGAGAAGAGAGCACAAGAGAAGGAATTCGAAATTGCTTTCT TCAGGGAATTTTGGCCTGATAACGTGTAAACCACAAACCTGGCGGCGTTGCAACTGTTGG CATCGGCTGATAATGCCATTGTATAGCTTATCGATGCTTCTGCAACTTGCACCTACTGTT CACTGTTTCTATCTTGTTCTGGCCCGAGTGTTACATTGATAGAGATATGTTGTAACAAAT GTTCTTTGATTGAAGAAAATGCGACTTGGGTTCCAT
Protein Sequence (114 aa)
>BART1_0-u02930.004 114 150831_barley_pseudomolecules MSSIGSSNIGFQLLKKSGWKEGTGLGAQEQGRLEPVETRVKNNKRGLGSKEPKPKAEDDV ETAPSKRPKPPYLPFGGQHLERIPYDSCVGREENFTWPPPHAGWQGNWGKRMSH