Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
None	-	-	-	-	-	Undefined

Transcripts from Gene BART1_0-u02930

Transcript	Length(bp)	Description
BART1_0-u02930.001	2280	2280 bp MSTRG.2930.1 MSTRG.2930
BART1_0-u02930.002	2277	2277 bp MSTRG.2930.2 MSTRG.2930
BART1_0-u02930.003	2558	2558 bp MSTRG.2930.3 MSTRG.2930
BART1_0-u02930.004	936	936 bp MSTRG.2930.4 MSTRG.2930

Exon Structure of BART1_0-u02930

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os05g06770.1	-1	3e-75	243	134/153 (88%)	protein|40S ribosomal protein S27a, putative, expressed
TAIR PP10	AT2G47110 @ ARAPORT AT2G47110.2 @ TAIR	-1	6e-72	233	131/158 (83%)	Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157
BRACH PP3	Bradi3g29730.1.p	-1	9e-82	260	139/159 (87%)	pacid=32819956 transcript=Bradi3g29730.1 locus=Bradi3g29730 ID=Bradi3g29730.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016887	ATPase activity
GO:0005794	Golgi apparatus
GO:0000776	kinetochore
GO:0044877	protein-containing complex binding
GO:0051321	meiotic cell cycle
GO:0009506	plasmodesma
GO:0003968	RNA-directed 5'-3' RNA polymerase activity
GO:0003729	mRNA binding
GO:0031397	negative regulation of protein ubiquitination
GO:0035434	copper ion transmembrane transport
GO:0010972	negative regulation of G2/M transition of mitotic cell cycle
GO:0032480	negative regulation of type I interferon production
GO:0042626	ATPase-coupled transmembrane transporter activity
GO:0044445	cytosolic part
GO:1904744	positive regulation of telomeric DNA binding
GO:0005840	ribosome
GO:0042026	protein refolding
GO:0044446	intracellular organelle part
GO:0005886	plasma membrane
GO:0000784	nuclear chromosome, telomeric region
GO:0006412	translation
GO:0005634	nucleus
GO:0031625	ubiquitin protein ligase binding
GO:0003735	structural constituent of ribosome
GO:0046872	metal ion binding
GO:0070198	protein localization to chromosome, telomeric region
GO:0031386	protein tag
GO:0051974	negative regulation of telomerase activity
GO:0016567	protein ubiquitination
GO:1902570	protein localization to nucleolus
GO:0019538	protein metabolic process
GO:1904751	positive regulation of protein localization to nucleolus
GO:0005375	copper ion transmembrane transporter activity
GO:0005730	nucleolus
GO:0005524	ATP binding
GO:0009408	response to heat
GO:0001172	transcription, RNA-templated
GO:0019941	modification-dependent protein catabolic process
GO:0039536	negative regulation of RIG-I signaling pathway
GO:0055085	transmembrane transport
GO:0007004	telomere maintenance via telomerase
GO:0006396	RNA processing
GO:0006874	cellular calcium ion homeostasis
GO:0003676	nucleic acid binding
GO:0031647	regulation of protein stability
GO:0005737	cytoplasm
GO:0016021	integral component of membrane
GO:0005819	spindle
GO:0032211	negative regulation of telomere maintenance via telomerase
GO:0007080	mitotic metaphase plate congression
GO:0010521	telomerase inhibitor activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons