- Transcript BART1_0-u01504.003
- Transcript IDBART1_0-u01504.003
- Gene IDBART1_0-u01504
Barley RTD
Exon Structure of BART1_0-u01504.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 75453824 | 75452006 | + |
| chr1H | 2 | 75454279 | 75454110 | + |
| chr1H | 3 | 75455702 | 75454369 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000070418 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.232353 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.107572 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0.00000000114873 | 0 |
| morex | LEM | 0 | 0 | 0.000000000210433 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.00106303 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g33010.1 | +3 | 3e-121 | 176 | 102/270 (38%) | protein|transposon protein, putative, unclassified, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3323 bp)
>BART1_0-u01504.003 3323 150831_barley_pseudomolecules CTGAATGTTCTGAATTTTTGACACTATCATAACTGAATGTTCTGAATTTTTTGTGCTGTC ATAACTGAAGTGTACACTGAATGTTCTAAGCTTTTTACACATTGTTTTAACAGATAGCAC TTAATTTGTTGGACAATGTATGAGCTTAAATCACTCCTAATTGTTGTGAACCAAAACTTC TGAATGCAGGAACTTTTGATGGTCTATTTAATGTTGCGATTCAGCACAAGGGTTTTCTCT GTGCAAATGGGAGCAACAGGAAGTACATGGACTATCAAGTTGACTGGTTTGACAATTGTG ATAGTGACACATGGTCAACCGTTTGGACAGATGATTTTCTACAGCAGTTGGGTCATGACA GATCTCACTCGAACCATGATGTGTATTGGCTGCAGCCTGGTAAAACATGTGAAGATGGAT TAAAGCTGCTGACCTGTGATGCAGGCATGCTAGCCATGATTGCTGCATCAGCAGAGCACA GTGCACAAAAATCTGGTTTTGATAGTTGACCATGGTGATACTCTAAGCAACTTACTAAGA TATGATGTGCTCCTTGATGGGGTACTTGAACAACCAATATTTATCAGTCCCAGCAAGTGT AGCAAGGGAAAGGAGGTTGTGGGTTCTTGCCAAGTTGTTGGAAGAAATACAAGAAATAAG AGAGCAAGGGGTTCTTCTTTTATTGATGCATGCTCTTCTTCGTGATGTCCTGTTGAAGTG GAAGAGCAGGAACAAGATGAAGGCAATGATGATTCTACGGATGAAGATTTCTATGGAAGT GATTATGAAGTAAATGAAGGTGATGATGACCTCTTTGAGCAGAATGTGGACAATGAAGTA GATGATCACAAAGAGAATCAGATTGTAGATGACTTTGAAGGAGAATTAGCTGAAGATGCA CTGGATGACTCTCATTTAAACCTAAGTAAAGAAGAGAGAGAGAGAGAGAGAGAAAATCAA GTACAAATTCAATGTGTTTAATTCAAAGACTGACATGAATTCACCGGAATTCAAACTTGG TATGGTCTTTGGTGATGCGAGGGAATTGAGAAAAGCTTTAGATTCTTATGTAGTGTGGAA CAGGGTGAAGGTAAGGAAGATTAGGAATTCATCCACCAGATTAGATGTTGTTTTCATAGA TGGTTGTCCATGGTACATGAATGCCTCCAAGGATGCGAGGACAAGCAGTTTCTTCATAAT GAAGTTTTGTGGAATTCACACTTGCAGTGAAGTCGGGAATGTCAAATCCTTGACTGCACC ATTTCTCTAATAAGTTCAAACATGAGTTCAGGGATAATGAGTAGATGCCCTTAAAGAAAT TTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTCCAACCAGAAGTAAGATAGGAAGGG CAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAGATGATGACCAGTACAAACTTCTGT TGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAGACAGCAAGTTCTATCTTTGCACAA AGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAGAACACTTCTCTACTCTATACTGGT CCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTTGTAGGCAAATAATCTTCGTTCATG GCTGCCACATAAAGACAAGGTACAAAGGGAATTTGCTAACTGCAGTTGGAATTGACCCAA ATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGGAAGTTGAGTCAACTGATAGTTGGG ATGGTTTCTGGCTAGTTTAAAGGTTGATCTGCATATTTGCAACACATCCCCATTCACAAT CATGAGTGACAAGCAAAAGATCAACTACTGTTGAGGCATATACCAACAATATGGAGAAGA TGAGAGTTGATAGCCAGGATGCATATAATTGGGTTGCGAAAGTGCCACCAAGGACATGGT TAAAGCATTCTTCAATCCTTTCCCAAAATGTGACATTCTTTTGAACGACATGTCTGAAGT ATTCAACAGCTATATCTTAGAAGAAAGAGAACTTCCAATTGGATCCATGCTAGGGAACAT TCAGAATAAGTTAACCCACAGATTTGAGTCAAAAAATAGGGAGGCAAGTGAGAAGTGGAC AGGGAGATTGTGCCCAAAAATGCAGAAAAAGGTAGAAACGTATGTTGAGTGGGCTAAGAA CTGCACAGTACTGGATGCTGGACAAAGGGTTTTCAAGGTGAAAGGGTTGAACAACTCATA TATTGTGGATTTAAACACAATGTGTTGTGATTGCAAAAGGTGGGAGTTGTCACCCTTCCC TGGGAGATTGAGTCTCTAGCTGCAGCAATAAATGTTACTCAGGAAGGGGGATATTTTGTC TGGGTAGGAATAATGACTTCTCTCCTAAACAAGGAAATGAGGTAAAGTGGGCACAGAAAT AATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAAAGATTTAAATATAGACTACATACA AAGCAAAATGAATGAATCTATAATCTAAATTATGTCTATATACATCTGTATGTTGTTCAT AGTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAACATCACATATGAA AAGGATATGATGACTTCTCTCCTAAACAAGGAAAACCCTAAACCCTAAACCTTCTTAAGA AAGAAGTTGCACAGGAGGATACCTCCCATCACAATGAAAAGCATCTACATGTCCATCACA ATAAAAAGCATCTACCAAGCGAGGGCATTCTTACTTGAGTAGTGTTGTGTTGTCTTGTTG ATGTAAGATTAGTGCTATGTTGTCTTGTTGATGTAATGGGATCATGTAATCCATCTTTTG TTGCAATAAGAATGAACATTTGGTTTGAGAGAAAAATATGATCAAAGTTAACATCACATC CAATGATCGATAACAAAATTAACATCACATGATAAAAGAGACAGCCACTACTCGAACCAT CTATGCATGCATCATCACATATTCTTCGATCAAGTTCAACAAAAGTCATCACATATTCTT CGATCAAGTTCAACAAAAGAGAGAACCACTACCGGAACAACTACTCGTGAAGTCCATGAT CATTTTAAAATTTCCTTCAGTTCATCCTTACTTAGAATATCTCGATAGTAAATGCTCATC AGTTCTAGCCTGACCTTTTCTGCGCCAGGAGGCACAGAGAATTGCTCGAGCGGCGGCATT GGGTCGCCATCGACCATCTCGTTGTACTTTTGTCAGTCGTAGATGCCACTATCATTGACG AGCGCATGCAGGGATGCCGCTGCATAACTCTGCTCTGCAATTGGATTCATTGACAGCCTT GAGTCTTGTGTGTACGTTATTCA
Protein Sequence (151 aa)
>BART1_0-u01504.003 151 150831_barley_pseudomolecules MPLKKFGAKVQTEYNMLPTRSKIGRARRAAVKQIRGEDDDQYKLLLDFGQELRRSNPDSK FYLCTKEVKKEKHPFPKEHFSTLYWSYDACKRGFLMGCRQIIFVHGCHIKTRYKGNLLTA VGIDPNDCIFSVAFGLVEVESTDSWDGFWLV