Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU1Hr1G019900	12.1	+	+	456	-3328	Containing

Transcripts from Gene BART1_0-u01504

Transcript	Length(bp)	Description
BART1_0-u01504.001	3692	3692 bp MSTRG.1504.1 MSTRG.1504
BART1_0-u01504.002	3206	3206 bp MSTRG.1504.2 MSTRG.1504
BART1_0-u01504.003	3323	3323 bp MSTRG.1504.3 MSTRG.1504
BART1_0-u01504.004	2422	2422 bp MSTRG.1504.4 MSTRG.1504

Exon Structure of BART1_0-u01504

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os09g08590.1	+3	7e-114	246	136/316 (43%)	protein|transposon protein, putative, unclassified, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	None	-	-	-	-	-

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons