- Transcript BART1_0-u01504.002
- Transcript IDBART1_0-u01504.002
- Gene IDBART1_0-u01504
Barley RTD
Exon Structure of BART1_0-u01504.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 75453824 | 75452006 | + |
| chr1H | 2 | 75454279 | 75453979 | + |
| chr1H | 3 | 75455454 | 75454369 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.2308 | 4.32577 | 8.04161 |
| morex | ETI | 4.77779 | 6.14455 | 5.51661 |
| morex | LEA | 2.0315 | 1.44601 | 4.49039 |
| morex | EPI | 4.47751 | 5.97518 | 5.1103 |
| morex | ROO | 0 | 3.87373 | 0 |
| morex | ROO2 | 6.70845 | 6.25742 | 7.54238 |
| morex | NOD | 3.28046 | 5.16376 | 7.86039 |
| morex | RAC | 3.89839 | 3.16992 | 4.20704 |
| morex | INF1 | 5.4792 | 7.11359 | 8.09254 |
| morex | INF2 | 6.05376 | 4.85955 | 3.95796 |
| morex | CAR5 | 4.49251 | 6.04882 | 9.13145 |
| morex | CAR15 | 2.13298 | 4.00651 | 3.39542 |
| morex | LEM | 3.63631 | 2.87174 | 3.10589 |
| morex | LOD | 3.74769 | 3.68883 | 3.53282 |
| morex | PAL | 3.28514 | 4.21925 | 2.66805 |
| morex | SEN | 2.0559 | 5.15506 | 2.59784 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g33010.1 | +3 | 1e-154 | 172 | 84/166 (51%) | protein|transposon protein, putative, unclassified, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3206 bp)
>BART1_0-u01504.002 3206 150831_barley_pseudomolecules CTGAATGTTCTGAATTTTTGACACTATCATAACTGAATGTTCTGAATTTTTTGTGCTGTC ATAACTGAAGTGTACACTGAATGTTCTAAGCTTTTTACACATTGTTTTAACAGATAGCAC TTAATTTGTTGGACAATGTATGAGCTTAAATCACTCCTAATTGTTGTGAACCAAAACTTC TGAATGCAGGAACTTTTGATGGTCTATTTAATGTTGCGATTCAGCACAAGGGTTTTCTCT GTGCAAATGGGAGCAACAGGAAGTACATGGACTATCAAGTTGACTGGTTTGACAATTGTG ATAGTGACACATGGTCAACCGTTTGGACAGATGATTTTCTACAGCAGTTGGGTCATGACA GATCTCACTCGAACCATGATGTGTATTGGCTGCAGCCTGGTAAAACATGTGAAGATGGAT TAAAGCTGCTGACCTGTGATGCAGGCATGCTAGCCATGATTGCTGCATCAGCAGAGCACA GTGCACAAAAATCTGGTTTTGATAGTTGACCATGGTGATACTCTAAGCAACTTACTAAGA TATGATGTGCTCCTTGATGGGGTACTTGAACAACCAATATTTATCAGTCCCAGCAAGTGT AGCAAGGGAAAGGAGGTTGTGGGTTCTTGCCAAGTTGTTGGAAGAAATACAAGAAATAAG AGAGCAAGGGGTTCTTCTTTTATTGATGCATGCTCTTCTTCGTGATGTCCTGTTGAAGTG GAAGAGCAGGAACAAGATGAAGGCAATGATGATTCTACGGATGAAGATTTCTATGGAAGT GATTATGAAGTAAATGAAGGTGATGATGACCTCTTTGAGCAGAATGTGGACAATGAAGTA GATGATCACAAAGAGAATCAGATTGTAGATGACTTTGAAGGAGAATTAGCTGAAGATGCA CTGGATGACTCTCATTTAAACCTAAGTAAAGAAGAGAGAGAGAGAGAGAGAGAAAATCAA GTACAAATTCAATGTGTTTAATTCAAAGACTGACATGAATTCACCGGAATTCAAACTTGG TATGGTCTTTGGTGATGCGAGGGAATTGAGAAAAGCTTTAGATTCTTATGTAGTGTGGAA CAGGGTGAAGGTAAGGAAGATTAGGAATTCATCCACCAGATTAGATGTTGTTTTCATAGA TGGTTGTCCATGGTACATGAATGCCTCCAAGGATGCGAGGACAAGCAGTTTCTTCATAAT GAAGTTTTGTGGAATTCACACTTGCAGTGAAGTCGGGAATGTCAAATCCTTGACTGCACC ATTTCTCTAATAAGTTCAAACATGAGTTCAGGGATAATGAGTAGATGCCCTTAAAGAAAT TTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTCCAACCAGAAGTAAGATAGGAAGGG CAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAGATGATGACCAGTACAAACTTCTGT TGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAGACAGCAAGTTCTATCTTTGCACAA AGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAGAACACTTCTCTACTCTATACTGGT CCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTTGTAGGCAAATAATCTTCGTTCATG GCTGCCACATAAAGACAAGGTACAAAGGGAATTTGCTAACTGCAGTTGGAATTGACCCAA ATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGGAAGTTGAGTCAACTGATAGTTGGG ATGGTTTCTGGCTAGTTTAAAGGTTGATCTGCATATTTGCAACACATCCCCATTCACAAT CATGAGTGACAAGCAAAAGAGTTTAATAGCTGCTGTCCAGAAGGTATTTCCTGATGCCGA ACACAGATTTTGTGTGAGGCATCTTTACCAGAATTTTCACAAACTTCACAAGGGTCAAAC ACTCAAAAACAACCTATGGGCCATTGCTAGATCAACTACTGTTGAGGCATATACCAACAA TATGGAGAAGATGAGAGTTGATAGCCAGGATGCATATAATTGGGTTGCGAAAGTGCCACC AAGGACATGGTTAAAGCATTCTTCAATCCTTTCCCAAAATGTGACATTCTTTTGAACGAC ATGTCTGAAGTATTCAACAGCTATATCTTAGAAGAAAGAGAACTTCCAATTGGATCCATG CTAGGGAACATTCAGAATAAGTTAACCCACAGATTTGAGTCAAAAAATAGGGAGGCAAGT GAGAAGTGGACAGGGAGATTGTGCCCAAAAATGCAGAAAAAGGTAGAAACGTATGTTGAG TGGGCTAAGAACTGCACAGTACTGGATGCTGGACAAAGGGTTTTCAAGGTGAAAGGGTTG AACAACTCATATATTGTGGATTTAAACACAATGTGTTGTGATTGCAAAAGGTGGGAGTTG TCACCCTTCCCTGGGAGATTGAGTCTCTAGCTGCAGCAATAAATGTTACTCAGGAAGGGG GATATTTTGTCTGGGTAGGAATAATGACTTCTCTCCTAAACAAGGAAATGAGGTAAAGTG GGCACAGAAATAATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAAAGATTTAAATATA GACTACATACAAAGCAAAATGAATGAATCTATAATCTAAATTATGTCTATATACATCTGT ATGTTGTTCATAGTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAACA TCACATATGAAAAGGATATGATGACTTCTCTCCTAAACAAGGAAAACCCTAAACCCTAAA CCTTCTTAAGAAAGAAGTTGCACAGGAGGATACCTCCCATCACAATGAAAAGCATCTACA TGTCCATCACAATAAAAAGCATCTACCAAGCGAGGGCATTCTTACTTGAGTAGTGTTGTG TTGTCTTGTTGATGTAAGATTAGTGCTATGTTGTCTTGTTGATGTAATGGGATCATGTAA TCCATCTTTTGTTGCAATAAGAATGAACATTTGGTTTGAGAGAAAAATATGATCAAAGTT AACATCACATCCAATGATCGATAACAAAATTAACATCACATGATAAAAGAGACAGCCACT ACTCGAACCATCTATGCATGCATCATCACATATTCTTCGATCAAGTTCAACAAAAGTCAT CACATATTCTTCGATCAAGTTCAACAAAAGAGAGAACCACTACCGGAACAACTACTCGTG AAGTCCATGATCATTTTAAAATTTCC
Protein Sequence (151 aa)
>BART1_0-u01504.002 151 150831_barley_pseudomolecules MPLKKFGAKVQTEYNMLPTRSKIGRARRAAVKQIRGEDDDQYKLLLDFGQELRRSNPDSK FYLCTKEVKKEKHPFPKEHFSTLYWSYDACKRGFLMGCRQIIFVHGCHIKTRYKGNLLTA VGIDPNDCIFSVAFGLVEVESTDSWDGFWLV