- Transcript BART1_0-u01500.003
- Transcript IDBART1_0-u01500.003
- Gene IDBART1_0-u01500
Barley RTD
Exon Structure of BART1_0-u01500.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 75397700 | 75396632 | - |
| chr1H | 2 | 75398090 | 75397790 | - |
| chr1H | 3 | 75400063 | 75398245 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.00000151082 | 2.1345 | 0.000000000825158 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 4.6621 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 3.39635 | 0 | 1.19585 |
| morex | ROO2 | 0.000585796 | 0.000017937 | 0.0118585 |
| morex | NOD | 3.14896 | 0.108529 | 0.0000176222 |
| morex | RAC | 0.000000306827 | 0.0000000975976 | 0 |
| morex | INF1 | 0.000438866 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 1.11946 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 1.23854 | 0 |
| morex | LOD | 0 | 0.0428837 | 0 |
| morex | PAL | 0 | 0 | 0.000392824 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g33010.1 | +3 | 1e-154 | 172 | 84/166 (51%) | protein|transposon protein, putative, unclassified, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3189 bp)
>BART1_0-u01500.003 3189 150831_barley_pseudomolecules CTGAATGTTCTGAATTTTTGACACTATCATAACTGAATGTTCTGAATTTTTTGTGCTGTC ATAACTGAAGTGTACACTGAATGTTCTAAGCTTTTTACACATTGTTTTAACAGATAGCAC TTAATTTGTTGGACAATGTATGAGCTTAAATCACTCCTAATTGTTGTGAACCAAAACTTC TGAATGCAGGAACTTTTGATGGTCTATTTAATGTTGCGATTCAGCACAAGGGTTTTCTCT GTGCAAATGGGAGCAACAGGAAGTACATGGACTATCAAGTTGACTGGTTTGACAATTGTG ATAGTGACACATGGTCAACCGTTTGGACAGATGATTTTCTACAGCAGTTGGGTCATGACA GATCTCACTCGAACCATGATGTGTATTGGCTGCAGCCTGGTAAAACATGTGAAGATGGAT TAAAGCTGCTGACCTGTGATGCAGGCATGCTAGCCATGATTGCTGCATCAGCAGAGCACA GTGCACAAAAATCTGGTTTTGATAGTTGACCATGGTGATACTCTAAGCAACTTACTAAGA TATGATGTGCTCCTTGATGGGGTACTTGAACAACCAATATTTATCAGTCCCAGCAAGTGT AGCAAGGGAAAGGAGGTTGTGGGTTCTTGCCAAGTTGTTGGAAGAAATACAAGAAATAAG AGAGCAAGGGGTTCTTCTTTTATTGATGCATGCTCTTCTTCGTGATGTCCTGTTGAAGTG GAAGAGCAGGAACAAGATGAAGGCAATGATGATTCTACGGATGAAGATTTCTATGGAAGT GATTATGAAGTAAATGAAGGTGATGATGACCTCTTTGAGCAGAATGTGGACAATGAAGTA GATGATCACAAAGAGAATCAGATTGTAGATGACTTTGAAGGAGAATTAGCTGAAGATGCA CTGGATGACTCTCATTTAAACCTAAGTAAAGAAGAGAGAGAGAGAGAGAGAGAAAATCAA GTACAAATTCAATGTGTTTAATTCAAAGACTGACATGAATTCACCGGAATTCAAACTTGG TATGGTCTTTGGTGATGCGAGGGAATTGAGAAAAGCTTTAGATTCTTATGTAGTGTGGAA CAGGGTGAAGGTAAGGAAGATTAGGAATTCATCCACCAGATTAGATGTTGTTTTCATAGA TGGTTGTCCATGGTACATGAATGCCTCCAAGGATGCGAGGACAAGCAGTTTCTTCATAAT GAAGTTTTGTGGAATTCACACTTGCAGTGAAGTCGGGAATGTCAAATCCTTGACTGCACC ATTTCTCTAATAAGTTCAAACATGAGTTCAGGGATAATGAGTAGATGCCCTTAAAGAAAT TTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTCCAACCAGAAGTAAGATAGGAAGGG CAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAGATGATGACCAGTACAAACTTCTGT TGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAGACAGCAAGTTCTATCTTTGCACAA AGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAGAACACTTCTCTACTCTATACTGGT CCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTTGTAGGCAAATAATCTTCGTTCATG GCTGCCACATAAAGACAAGGTACAAAGGGAATTTGCTAACTGCAGTTGGAATTGACCCAA ATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGGAAGTTGAGTCAACTGATAGTTGGG ATGGTTTCTGGCTAGTTTAAAGGTTGATCTGCATATTTGCAACACATCCCCATTCACAAT CATGAGTGACAAGCAAAAGAGTTTAATAGCTGCTGTCCAGAAGGTATTTCCTGATGCCGA ACACAGATTTTGTGTGAGGCATCTTTACCAGAATTTTCACAAACTTCACAAGGGTCAAAC ACTCAAAAACAACCTATGGGCCATTGCTAGATCAACTACTGTTGAGGCATATACCAACAA TATGGAGAAGATGAGAGTTGATAGCCAGGATGCATATAATTGGGTTGCGAAAGTGCCACC AAGGACATGGTTAAAGCATTCTTCAATCCTTTCCCAAAATGTGACATTCTTTTGAACGAC ATGTCTGAAGTATTCAACAGCTATATCTTAGAAGAAAGAGAACTTCCAATTGGATCCATG CTAGGGAACATTCAGAATAAGTTAACCCACAGATTTGAGTCAAAAAATAGGGAGGCAAGT GAGAAGTGGACAGGGAGATTGTGCCCAAAAATGCAGAAAAAGGTAGAAACGTATGTTGAG TGGGCTAAGAACTGCACAGTACTGGATGCTGGACAAAGGGTTTTCAAGGTGAAAGGGTTG AACAACTCATATATTGTGGATTTAAACACAATGTGTTGTGATTGCAAAAGGTGGGAGTTG TCACCCTTCCCTGGGAGATTGAGTCTCTAGCTGCAGCAATAAATGTTACTCAGGAAGGGG GATATTTTGTCTGGGTAGGAATAATGACTTCTCTCCTAAACAAGGAAATGAGTTAAAGTG GGCACAGAAATAATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAAAGATTTAAATATA GACTACATACAAAGCAAAATGAATGAATCTATAATCTAAATTATGTCTATATACATCTGT ATGTTGTTCATAGTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAACA TCACATATGAAAAGGATATGATGACTTCTCTCCTAAACAAGGAAAACCCTAAACCCTAAA CCTTCTTAAGAAAGAAGTTGCACAGGAGGATACCTCCCATCACAATGAAAAGCATCTACA TGTCCATCACAATAAAAAGCATCTACCAAGCGAGGGCATTCTTACTTGAGTAGTGTTGTG TTGTCTTGTTGATGTAAGATTAGTGCTATGTTGTCTTGTTGATGTAATGGGATCATGTAA TCCATCTTTTGTTGCAATAAGAATGAACATTTGGTTTGAGAGAAAAATATGATCAAAGTT AACATCACATCCAATGATCGATAACAAAATTAACATCACATGATAAAAGAGACAGCCACT ACTCGAACCATCTATGCATGCATCATCACATATTCTTCGATCAAGTTCAACAAAAGTCAT CACATATTCTTCGATCAAGTTCAACAAAAGAGAGAACCACTACCGGAACAACTACTCGTG AAGTCCATG
Protein Sequence (151 aa)
>BART1_0-u01500.003 151 150831_barley_pseudomolecules MPLKKFGAKVQTEYNMLPTRSKIGRARRAAVKQIRGEDDDQYKLLLDFGQELRRSNPDSK FYLCTKEVKKEKHPFPKEHFSTLYWSYDACKRGFLMGCRQIIFVHGCHIKTRYKGNLLTA VGIDPNDCIFSVAFGLVEVESTDSWDGFWLV