Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU1Hr1G01987012.7--456-3135Containing




Transcripts from Gene BART1_0-u01500

TranscriptLength(bp)Description
BART1_0-u01500.00135023502 bp MSTRG.1500.1 MSTRG.1500
BART1_0-u01500.00231333133 bp MSTRG.1500.2 MSTRG.1500
BART1_0-u01500.00331893189 bp MSTRG.1500.3 MSTRG.1500



Exon Structure of BART1_0-u01500


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g08590.1 +3 6e-114 246 136/316 (43%) protein|transposon protein, putative, unclassified, expressed
TAIR PP10None-----
BRACH PP3None-----




GO Annotation

There is no GO annotation for this gene




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons