- Gene BART1_0-u01500
- Gene IDBART1_0-u01500
- Location chr1H: 75396557 - 75400147
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU1Hr1G019870 | 12.7 | - | - | 456 | -3135 | Containing |
Transcripts from Gene BART1_0-u01500
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u01500.001 | 3502 | 3502 bp MSTRG.1500.1 MSTRG.1500 |
BART1_0-u01500.002 | 3133 | 3133 bp MSTRG.1500.2 MSTRG.1500 |
BART1_0-u01500.003 | 3189 | 3189 bp MSTRG.1500.3 MSTRG.1500 |
Exon Structure of BART1_0-u01500
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os09g08590.1 | +3 | 6e-114 | 246 | 136/316 (43%) | protein|transposon protein, putative, unclassified, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | None | - | - | - | - | - |
GO Annotation
There is no GO annotation for this geneBarley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons