- Transcript BART1_0-u01500.002
- Transcript IDBART1_0-u01500.002
- Gene IDBART1_0-u01500
Barley RTD
Exon Structure of BART1_0-u01500.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 75397700 | 75396557 | - |
| chr1H | 2 | 75397959 | 75397790 | - |
| chr1H | 3 | 75400063 | 75398245 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.61806 | 2.79802 | 6.1222 |
| morex | ETI | 0 | 0 | 0.000000166074 |
| morex | LEA | 3.55644 | 1.03367 | 0 |
| morex | EPI | 0 | 0.0000000082574 | 0 |
| morex | ROO | 1.24977 | 2.71786 | 0.534119 |
| morex | ROO2 | 0.00000793797 | 0.000000000398656 | 0 |
| morex | NOD | 3.85198 | 0.00599555 | 4.78301 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.371533 | 0 | 5.87676 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 1.53396 | 2.29294 |
| morex | CAR15 | 3.08418 | 4.04785 | 4.18613 |
| morex | LEM | 0 | 0.370482 | 0.000000000637681 |
| morex | LOD | 0 | 0 | 0.64345 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 1.63022 | 0.539542 | 0.570845 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g33010.1 | +3 | 2e-121 | 176 | 102/270 (38%) | protein|transposon protein, putative, unclassified, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3133 bp)
>BART1_0-u01500.002 3133 150831_barley_pseudomolecules CTGAATGTTCTGAATTTTTGACACTATCATAACTGAATGTTCTGAATTTTTTGTGCTGTC ATAACTGAAGTGTACACTGAATGTTCTAAGCTTTTTACACATTGTTTTAACAGATAGCAC TTAATTTGTTGGACAATGTATGAGCTTAAATCACTCCTAATTGTTGTGAACCAAAACTTC TGAATGCAGGAACTTTTGATGGTCTATTTAATGTTGCGATTCAGCACAAGGGTTTTCTCT GTGCAAATGGGAGCAACAGGAAGTACATGGACTATCAAGTTGACTGGTTTGACAATTGTG ATAGTGACACATGGTCAACCGTTTGGACAGATGATTTTCTACAGCAGTTGGGTCATGACA GATCTCACTCGAACCATGATGTGTATTGGCTGCAGCCTGGTAAAACATGTGAAGATGGAT TAAAGCTGCTGACCTGTGATGCAGGCATGCTAGCCATGATTGCTGCATCAGCAGAGCACA GTGCACAAAAATCTGGTTTTGATAGTTGACCATGGTGATACTCTAAGCAACTTACTAAGA TATGATGTGCTCCTTGATGGGGTACTTGAACAACCAATATTTATCAGTCCCAGCAAGTGT AGCAAGGGAAAGGAGGTTGTGGGTTCTTGCCAAGTTGTTGGAAGAAATACAAGAAATAAG AGAGCAAGGGGTTCTTCTTTTATTGATGCATGCTCTTCTTCGTGATGTCCTGTTGAAGTG GAAGAGCAGGAACAAGATGAAGGCAATGATGATTCTACGGATGAAGATTTCTATGGAAGT GATTATGAAGTAAATGAAGGTGATGATGACCTCTTTGAGCAGAATGTGGACAATGAAGTA GATGATCACAAAGAGAATCAGATTGTAGATGACTTTGAAGGAGAATTAGCTGAAGATGCA CTGGATGACTCTCATTTAAACCTAAGTAAAGAAGAGAGAGAGAGAGAGAGAGAAAATCAA GTACAAATTCAATGTGTTTAATTCAAAGACTGACATGAATTCACCGGAATTCAAACTTGG TATGGTCTTTGGTGATGCGAGGGAATTGAGAAAAGCTTTAGATTCTTATGTAGTGTGGAA CAGGGTGAAGGTAAGGAAGATTAGGAATTCATCCACCAGATTAGATGTTGTTTTCATAGA TGGTTGTCCATGGTACATGAATGCCTCCAAGGATGCGAGGACAAGCAGTTTCTTCATAAT GAAGTTTTGTGGAATTCACACTTGCAGTGAAGTCGGGAATGTCAAATCCTTGACTGCACC ATTTCTCTAATAAGTTCAAACATGAGTTCAGGGATAATGAGTAGATGCCCTTAAAGAAAT TTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTCCAACCAGAAGTAAGATAGGAAGGG CAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAGATGATGACCAGTACAAACTTCTGT TGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAGACAGCAAGTTCTATCTTTGCACAA AGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAGAACACTTCTCTACTCTATACTGGT CCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTTGTAGGCAAATAATCTTCGTTCATG GCTGCCACATAAAGACAAGGTACAAAGGGAATTTGCTAACTGCAGTTGGAATTGACCCAA ATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGGAAGTTGAGTCAACTGATAGTTGGG ATGGTTTCTGGCTAGTTTAAAGGTTGATCTGCATATTTGCAACACATCCCCATTCACAAT CATGAGTGACAAGCAAAAGATCAACTACTGTTGAGGCATATACCAACAATATGGAGAAGA TGAGAGTTGATAGCCAGGATGCATATAATTGGGTTGCGAAAGTGCCACCAAGGACATGGT TAAAGCATTCTTCAATCCTTTCCCAAAATGTGACATTCTTTTGAACGACATGTCTGAAGT ATTCAACAGCTATATCTTAGAAGAAAGAGAACTTCCAATTGGATCCATGCTAGGGAACAT TCAGAATAAGTTAACCCACAGATTTGAGTCAAAAAATAGGGAGGCAAGTGAGAAGTGGAC AGGGAGATTGTGCCCAAAAATGCAGAAAAAGGTAGAAACGTATGTTGAGTGGGCTAAGAA CTGCACAGTACTGGATGCTGGACAAAGGGTTTTCAAGGTGAAAGGGTTGAACAACTCATA TATTGTGGATTTAAACACAATGTGTTGTGATTGCAAAAGGTGGGAGTTGTCACCCTTCCC TGGGAGATTGAGTCTCTAGCTGCAGCAATAAATGTTACTCAGGAAGGGGGATATTTTGTC TGGGTAGGAATAATGACTTCTCTCCTAAACAAGGAAATGAGTTAAAGTGGGCACAGAAAT AATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAAAGATTTAAATATAGACTACATACA AAGCAAAATGAATGAATCTATAATCTAAATTATGTCTATATACATCTGTATGTTGTTCAT AGTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAACATCACATATGAA AAGGATATGATGACTTCTCTCCTAAACAAGGAAAACCCTAAACCCTAAACCTTCTTAAGA AAGAAGTTGCACAGGAGGATACCTCCCATCACAATGAAAAGCATCTACATGTCCATCACA ATAAAAAGCATCTACCAAGCGAGGGCATTCTTACTTGAGTAGTGTTGTGTTGTCTTGTTG ATGTAAGATTAGTGCTATGTTGTCTTGTTGATGTAATGGGATCATGTAATCCATCTTTTG TTGCAATAAGAATGAACATTTGGTTTGAGAGAAAAATATGATCAAAGTTAACATCACATC CAATGATCGATAACAAAATTAACATCACATGATAAAAGAGACAGCCACTACTCGAACCAT CTATGCATGCATCATCACATATTCTTCGATCAAGTTCAACAAAAGTCATCACATATTCTT CGATCAAGTTCAACAAAAGAGAGAACCACTACCGGAACAACTACTCGTGAAGTCCATGAT CATTTTAAAATTTCCTTCAGTTCATCCTTACTTAGAATATCTCGATAGTAAATGCTCATC AGTTCTAGCCTGA
Protein Sequence (151 aa)
>BART1_0-u01500.002 151 150831_barley_pseudomolecules MPLKKFGAKVQTEYNMLPTRSKIGRARRAAVKQIRGEDDDQYKLLLDFGQELRRSNPDSK FYLCTKEVKKEKHPFPKEHFSTLYWSYDACKRGFLMGCRQIIFVHGCHIKTRYKGNLLTA VGIDPNDCIFSVAFGLVEVESTDSWDGFWLV