- Transcript BART1_0-u01500.001
- Transcript IDBART1_0-u01500.001
- Gene IDBART1_0-u01500
Barley RTD
Exon Structure of BART1_0-u01500.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 75397700 | 75396557 | - |
| chr1H | 2 | 75400147 | 75397790 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 12.1657 | 19.6264 | 17.5126 |
| morex | ETI | 8.95705 | 11.9726 | 14.0229 |
| morex | LEA | 8.00544 | 10.4971 | 11.2893 |
| morex | EPI | 14.1788 | 15.9212 | 16.9873 |
| morex | ROO | 3.66112 | 8.73669 | 5.21826 |
| morex | ROO2 | 11.5465 | 12.4823 | 11.254 |
| morex | NOD | 8.58765 | 10.6052 | 10.5239 |
| morex | RAC | 6.5838 | 6.88062 | 7.55937 |
| morex | INF1 | 20.5683 | 17.3427 | 21.1189 |
| morex | INF2 | 16.2409 | 23.115 | 20.4735 |
| morex | CAR5 | 15.1285 | 12.4089 | 19.3198 |
| morex | CAR15 | 9.08435 | 6.3492 | 8.65199 |
| morex | LEM | 4.57019 | 4.25234 | 3.8133 |
| morex | LOD | 5.1774 | 5.81788 | 4.53552 |
| morex | PAL | 3.34015 | 2.75623 | 3.72288 |
| morex | SEN | 5.05879 | 5.49467 | 6.3668 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g08590.1 | +3 | 6e-114 | 246 | 136/316 (43%) | protein|transposon protein, putative, unclassified, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3502 bp)
>BART1_0-u01500.001 3502 150831_barley_pseudomolecules ACTGAATTTCTGCTGCAGTTTTGTTAAAAGAATGATCTGAACTTTATGCACACGGAATCT TTTGAATTTTTTATACTGTCATAACTGAATGTTCTGAATTTTTGACACTATCATAACTGA ATGTTCTGAATTTTTTGTGCTGTCATAACTGAAGTGTACACTGAATGTTCTAAGCTTTTT ACACATTGTTTTAACAGATAGCACTTAATTTGTTGGACAATGTATGAGCTTAAATCACTC CTAATTGTTGTGAACCAAAACTTCTGAATGCAGGAACTTTTGATGGTCTATTTAATGTTG CGATTCAGCACAAGGGTTTTCTCTGTGCAAATGGGAGCAACAGGAAGTACATGGACTATC AAGTTGACTGGTTTGACAATTGTGATAGTGACACATGGTCAACCGTTTGGACAGATGATT TTCTACAGCAGTTGGGTCATGACAGATCTCACTCGAACCATGATGTGTATTGGCTGCAGC CTGGTAAAACATGTGAAGATGGATTAAAGCTGCTGACCTGTGATGCAGGCATGCTAGCCA TGATTGCTGCATCAGCAGAGCACAGTGCACAAAAATCTGGTTTTGATAGTTGACCATGGT GATACTCTAAGCAACTTACTAAGATATGATGTGCTCCTTGATGGGGTACTTGAACAACCA ATATTTATCAGTCCCAGCAAGTGTAGCAAGGGAAAGGAGGTTGTGGGTTCTTGCCAAGTT GTTGGAAGAAATACAAGAAATAAGAGAGCAAGGGGTTCTTCTTTTATTGATGCATGCTCT TCTTCGTGATGTCCTGTTGAAGTGGAAGAGCAGGAACAAGATGAAGGCAATGATGATTCT ACGGATGAAGATTTCTATGGAAGTGATTATGAAGTAAATGAAGGTGATGATGACCTCTTT GAGCAGAATGTGGACAATGAAGTAGATGATCACAAAGAGAATCAGATTGTAGATGACTTT GAAGGAGAATTAGCTGAAGATGCACTGGATGACTCTCATTTAAACCTAAGTAAAGAAGAG AGAGAGAGAGAGAGAGAAAATCAAGTACAAATTCAATGTGTTTAATTCAAAGACTGACAT GAATTCACCGGAATTCAAACTTGGTATGGTCTTTGGTGATGCGAGGGAATTGAGAAAAGC TTTAGATTCTTATGTAGTGTGGAACAGGGTGAAGGTAAGGAAGATTAGGAATTCATCCAC CAGATTAGATGTTGTTTTCATAGATGGTTGTCCATGGTACATGAATGCCTCCAAGGATGC GAGGACAAGCAGTTTCTTCATAATGAAGTTTTGTGGAATTCACACTTGCAGTGAAGTCGG GAATGTCAAATCCTTGACTGCACCATTTCTCTAATAAGTTCAAACATGAGTTCAGGGATA ATGAGTAGATGCCCTTAAAGAAATTTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTC CAACCAGAAGTAAGATAGGAAGGGCAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAG ATGATGACCAGTACAAACTTCTGTTGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAG ACAGCAAGTTCTATCTTTGCACAAAGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAG AACACTTCTCTACTCTATACTGGTCCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTT GTAGGCAAATAATCTTCGTTCATGGCTGCCACATAAAGACAAGGTACAAAGGGAATTTGC TAACTGCAGTTGGAATTGACCCAAATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGG AAGTTGAGTCAACTGATAGTTGGGATGGTTTCTGGCTAGTTTAAAGGTTGATCTGCATAT TTGCAACACATCCCCATTCACAATCATGAGTGACAAGCAAAAGGTACTGAAAATGCTCGC TGAATTTTGTTGCACACTGTCATAACACAACACTGAATTTTGCTCTGAACATGTTCACTA AATATTGCACACAACATTGAATTTTGCTTTGGTTATGCTATCTCAATGCTCTCTCGTGTA ATATTCTTTATTGGTAGAGTTTAATAGCTGCTGTCCAGAAGGTATTTCCTGATGCCGAAC ACAGATTTTGTGTGAGGCATCTTTACCAGAATTTTCACAAACTTCACAAGGGTCAAACAC TCAAAAACAACCTATGGGCCATTGCTAGATCAACTACTGTTGAGGCATATACCAACAATA TGGAGAAGATGAGAGTTGATAGCCAGGATGCATATAATTGGGTTGCGAAAGTGCCACCAA GGACATGGTTAAAGCATTCTTCAATCCTTTCCCAAAATGTGACATTCTTTTGAACGACAT GTCTGAAGTATTCAACAGCTATATCTTAGAAGAAAGAGAACTTCCAATTGGATCCATGCT AGGGAACATTCAGAATAAGTTAACCCACAGATTTGAGTCAAAAAATAGGGAGGCAAGTGA GAAGTGGACAGGGAGATTGTGCCCAAAAATGCAGAAAAAGGTAGAAACGTATGTTGAGTG GGCTAAGAACTGCACAGTACTGGATGCTGGACAAAGGGTTTTCAAGGTGAAAGGGTTGAA CAACTCATATATTGTGGATTTAAACACAATGTGTTGTGATTGCAAAAGGTGGGAGTTGTC ACCCTTCCCTGGGAGATTGAGTCTCTAGCTGCAGCAATAAATGTTACTCAGGAAGGGGGA TATTTTGTCTGGGTAGGAATAATGACTTCTCTCCTAAACAAGGAAATGAGTTAAAGTGGG CACAGAAATAATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAAAGATTTAAATATAGA CTACATACAAAGCAAAATGAATGAATCTATAATCTAAATTATGTCTATATACATCTGTAT GTTGTTCATAGTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAACATC ACATATGAAAAGGATATGATGACTTCTCTCCTAAACAAGGAAAACCCTAAACCCTAAACC TTCTTAAGAAAGAAGTTGCACAGGAGGATACCTCCCATCACAATGAAAAGCATCTACATG TCCATCACAATAAAAAGCATCTACCAAGCGAGGGCATTCTTACTTGAGTAGTGTTGTGTT GTCTTGTTGATGTAAGATTAGTGCTATGTTGTCTTGTTGATGTAATGGGATCATGTAATC CATCTTTTGTTGCAATAAGAATGAACATTTGGTTTGAGAGAAAAATATGATCAAAGTTAA CATCACATCCAATGATCGATAACAAAATTAACATCACATGATAAAAGAGACAGCCACTAC TCGAACCATCTATGCATGCATCATCACATATTCTTCGATCAAGTTCAACAAAAGTCATCA CATATTCTTCGATCAAGTTCAACAAAAGAGAGAACCACTACCGGAACAACTACTCGTGAA GTCCATGATCATTTTAAAATTTCCTTCAGTTCATCCTTACTTAGAATATCTCGATAGTAA ATGCTCATCAGTTCTAGCCTGA
Protein Sequence (151 aa)
>BART1_0-u01500.001 151 150831_barley_pseudomolecules MPLKKFGAKVQTEYNMLPTRSKIGRARRAAVKQIRGEDDDQYKLLLDFGQELRRSNPDSK FYLCTKEVKKEKHPFPKEHFSTLYWSYDACKRGFLMGCRQIIFVHGCHIKTRYKGNLLTA VGIDPNDCIFSVAFGLVEVESTDSWDGFWLV