Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G050700	81.8	-	-	4376	-972	Containing

Transcripts from Gene BART1_0-u29262

Transcript	Length(bp)	Description
BART1_0-u29262.001	4641	4641 bp MSTRG.29262.1 MSTRG.29262
BART1_0-u29262.002	4636	4636 bp MSTRG.29262.2 MSTRG.29262
BART1_0-u29262.003	4161	4161 bp MSTRG.29262.3 MSTRG.29262

Exon Structure of BART1_0-u29262

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g56330.1	+1	0.0	1453	742/855 (87%)	protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
TAIR PP10	AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR	+1	0.0	1088	567/874 (65%)	Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895
BRACH PP3	Bradi1g63320.1.p	+1	0.0	1536	787/855 (92%)	pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0010483	pollen tube reception
GO:0009791	post-embryonic development
GO:0042254	ribosome biogenesis
GO:0006468	protein phosphorylation
GO:0007338	single fertilization
GO:0043401	steroid hormone mediated signaling pathway
GO:0048364	root development
GO:0005525	GTP binding
GO:0005524	ATP binding
GO:0009506	plasmodesma
GO:0030308	negative regulation of cell growth
GO:0052692	raffinose alpha-galactosidase activity
GO:0000160	phosphorelay signal transduction system
GO:0010118	stomatal movement
GO:0070003	threonine-type peptidase activity
GO:0018212	peptidyl-tyrosine modification
GO:0050832	defense response to fungus
GO:0004175	endopeptidase activity
GO:0004672	protein kinase activity
GO:0009741	response to brassinosteroid
GO:0043531	ADP binding
GO:0005886	plasma membrane
GO:0009723	response to ethylene
GO:0009788	negative regulation of abscisic acid-activated signaling pathway
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0005634	nucleus
GO:0005975	carbohydrate metabolic process
GO:0009738	abscisic acid-activated signaling pathway
GO:0005515	protein binding
GO:0043680	filiform apparatus
GO:0005737	cytoplasm
GO:0016021	integral component of membrane
GO:0019773	proteasome core complex, alpha-subunit complex

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons