- Transcript BART1_0-u29262.003
- Transcript IDBART1_0-u29262.003
- Gene IDBART1_0-u29262
Barley RTD
Exon Structure of BART1_0-u29262.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 413785241 | 413784231 | - |
| chr4H | 2 | 413787934 | 413785949 | - |
| chr4H | 3 | 413789200 | 413788037 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 14.5897 | 13.7664 | 8.14888 |
| morex | ETI | 9.86476 | 8.05646 | 12.8552 |
| morex | LEA | 14.9759 | 4.43495 | 2.81333 |
| morex | EPI | 8.18049 | 18.8368 | 9.03912 |
| morex | ROO | 11.3148 | 11.9773 | 3.74153 |
| morex | ROO2 | 24.7924 | 31.684 | 27.6133 |
| morex | NOD | 14.9444 | 20.2708 | 13.0153 |
| morex | RAC | 42.9139 | 45.1719 | 48.4731 |
| morex | INF1 | 14.6643 | 16.1558 | 13.1954 |
| morex | INF2 | 13.2589 | 17.3677 | 11.2952 |
| morex | CAR5 | 29.9671 | 31.1091 | 20.6758 |
| morex | CAR15 | 9.39893 | 6.27946 | 6.18937 |
| morex | LEM | 62.4353 | 66.0317 | 64.0054 |
| morex | LOD | 115.199 | 95.2819 | 94.2415 |
| morex | PAL | 49.1944 | 51.4918 | 45.8974 |
| morex | SEN | 6.07807 | 5.25315 | 4.84674 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g56330.1 | +1 | 0.0 | 1382 | 716/855 (84%) | protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed |
| TAIR PP10 | AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR |
+1 | 0.0 | 1060 | 557/873 (64%) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895 |
| BRACH PP3 | Bradi1g63320.1.p | +1 | 0.0 | 1470 | 763/855 (89%) | pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4161 bp)
>BART1_0-u29262.003 4161 150831_barley_pseudomolecules GTCAACGGTCCATGACGAGCGGGCCCCCCACGTCTTCCCCTGCACATGGCCGCGGTTCCC ACCACCGAAAAACGGTACCCAAAAAGCTTTTTTTAAAAAGCCCGGGGAAAACGGGACGCG CAAGCGCAACTGAGGCAAGCTGTCCTCCACCGTCACCACACCGCGCGCGCAGCACCCGTA CCGTTCCGCGGGGCCCGTCGTCCCGTCGCCCCCACCGGCCAGTGGAACACACCAGGCCAC GAGAGTGACACACGCACGCTACCGCGGCGGTGAAAAGAGGCAGAGCAAGCGCAGCGGCAG CACAGCAGTCGTAGAGAGAGCCGAGCGGAGTAGGTCGCCGTTGCCGTTGCTGGCAACCCC ACTTTAATGCCGCGCCCGTAGTCCCGAAACCTCTCTCCCCTTCCTTTCTTCCCTGACGCC ACCTCGGCCACCACTTTCCCCTCAAATCTCACCTCCTCCGCCACGCGCTGCCCGCCGCTT CTCTCGCCAGCACGCAAATCCGCCCCCAGATCGGCGCCGGGAGAGCCGTTTCATGGGCGA TCTGTGAGCCGCGACGAAACGCAAGCTACTGCCATGAGAGGGCCCCCGAGATGCGCGCTC CTGCTCCTCCTGGCCGCCGCGGCGCTTGTCCCCGCAGCGCGGGCGCAGGGGGCGGCCGCG CCCGCGCCCTCGGCGGGGGCCGCGTTCGTTCCGCGGGACGACATCCTGCTCGACTGCGGC GCCACGGGGAAGGGGAACGACACGGACGGCCGCCAGTGGGACGGCGACGCGGGGTCCAAG TACGCGCCTCCAAACCTCGCCTCGGCCAGCGCCGGGGCGCAGGACCCCTCGGTGCCGCAG GTGCCCTACCTCACCGCGCGGGTGTCGGCGGCGCCCTTCACCTACTCCTTCCCGCTCGGC CCCGGCCGCAAGTTCCTCAGGCTGCACTTCTACCCGGCAAACTACTCCAACCGCGACGCC GCCGACGCCTTCTTCTCCGTCTCCGTCCCGGCCGCCAAGGTCACGCTCCTCTCCAACTTC AGCGCCTACCAGACCATAACGGCGCTCAACTTCGCCTACCTCGTGCGCGAGTTCTCCGTC AACGTCACCGGCCAGAACCTCGACCTCACCTTCACTCCGGAGAAGGGCCGCCCCAACGCC TACGCCTTCGTCAACGGCATCGAGACCATGTATCGGCTCAACGTCGGAGGCCAGGCCATC TCCCCTTCCAAGGACTCCGGCGGGGCTCGCTCATGGGACGACGACACGCCTTACATTTAC GGTGCAGGGGCAGGGGTATCGTACCAGAACGATCCCAATGTCACAATCACCTATCCTGAC AATGTGCCGGGATATGTGGCACCTTCGGATGTCTATGCCACGGCGCGATCAATGGGGCCA GACAAGGGTGTAAACTTGGCCTACAATCTCACCTGGATATTGCAGGTGGATGCTGGGTAC CAATACCTTGTGAGGCTCCATTTCTGTGAGATACAATCCCCATTTACTAAACCCAACCAG CGGGTCTTCAGCATCTACCTCAACAACCAGACTGCCATGAAAGGTGCTGATGTGATCCTG TGGGCGGATCCCAATGGTATTGGTACTCCAGTGTATAAGGACTATGTGGTGAGCACTGTG GGTTCTGGGACTATGGATTTCTGGGTGGCTTTACATCCGGATGTAGAGACGAAGCCGCAG TACTATGATGCTATTCTCAATGGGATGGAGGTGTTCAAGCTGCAACTTACTAATGGGAGC CTCGTGGGGCTCAATCCTCTCCCAAGTCCTGATCCACCAGTGAATAGCGGGTCAGGAAAC AAGAAATCAATAGTCGTGCCGATTGTTGGTGGAGTAGTCGGAGGTTTGGCAGTGCTTGCG CTTGGATATTGCTGCTTCATCTGCAAGCGTCGGAGGAAAGCGGCCAAGGCTAGCGGCATG AGTGATGGCCATTCTGGTTGGCTCCCATTGTCGCTGTATGGCCATTCACACACTTCAAGC TCAGCCAAGTCGCATGCTACAGGCAGTTATGCTTCATCTTTGCCATCCAACCTGTGCCGC CACTTCTCATTTGCGGAGATCAAGGCCGCAACAAAAAACTTTGATGAGTCACGAATCCTT GGTGTTGGTGGGTTCGGTAAAGTTTACCATGGAGAAATTGACGGGGGCACAACTAAGGTG GCTATCAAGCGTGGCAATCCCTTGTCTGAGCAGGGCATACATGAGTTCCAGACTGAAATT GAAATGTTGTCAAAGCTCCGGCACCGTCATCTTGTGTCGCTGATTGGTTACTGCGAGGAG AAGAATGAGATGATCCTGGTCTATGACTACATGGCTCATGGAACCCTGCGTGAGCACCTA TACAAGACCCAGAATGCACCGCTTAGCTGGAGGCAGCGTTTGGAGATCTGCATCGGTGCT GCTCGTGGGCTTCACTACCTTCATACCGGTGCAAAGCACACCATTATCCACCGTGATGTG AAGACGACAAACATCCTCCTGGATGAGAAATGGGTTGCCAAGGTTTCAGATTTTGGTCTG TCCAAGACTGGGCCATCGATGGATCACACACATGTGAGCACAGTTGTCAAGGGCAGTTTT GGTTACCTTGATCCTGAATATTTCCGCAGGCAGCAGCTCACTGAGAAATCTGATGTCTAT TCCTTTGGTGTGGTGCTGTTCGAGGTCCTTTGTGCTCGGCCTGCCTTGAACCCCACTCTT GCAAAGGAAGAAGTTAGCTTGGCAGAGTGGGCATTGCACTGCCAAAAGAAGGGAATTCTT GATCAGATTGTTGATCCCTACCTCAAAGGAAAGATTGTTCCGCAGTGCTTCAAGAAGTTT GCCGAGACGGCTGAGAAGTGTGTTGCCGACAATGGCATTGAGCGCCCTTCGATGGGAGAT GTGCTTTGGAACTTGGAGTTTGCTCTTCAGATGCAGGAAAGCGCGGAGGAGAGCGGAAGC ATTGGCTGTGGGATGTCAGATGAGGGCACTCCCCTCGTGATGGTTGGAAAGAAGGATCCC AATGACCCATCAATTGATTCAAGCACCACGACGACCACAACAACTTCCTTAAGCATGGGT GACCAAAGTGTCGCGAGCATCGACTCGGATGGGCTGACGCCAAGCGCGGTGTTCTCACAG ATCATGAACCCCAAGGGGCGGTGAGGTGAGAAAGAGTGGAATCGAATAAATCTAGCTCCC AGCTGTTCCGCCGAGAGAATTAGCTTCCGGTGTCCAGTCTGTTGAGTGGAGGAATGAAGA TTCGACAGATGGGTGGAGAGATCATCGTGAAATCGCCCAGTGGGTGGATGGACGACGTTT CGGGAAGCATTGATCATGATGCCGCCCAACCCTAAATCTTGTGCCTGTTCTGATGCGTCT TTGCTGGCCTTGTATATGTCCGTTTGCTTTCTTGCCAAACTTCTATTCCTTTTCTTGAAT CATGTAAGGAGGGTTTTTCTGAGAGCCACAAACAGCTGTAGGGAGCACAAGTTGTGTTGC AAACCACGAGACGTGTCACCCGGTATCTCTTCATGTATATGCTAGCAATATTCTGATTAC CAACTTCTGAAGTTCTGGTACCTGCTATCAGCTCGATCTCATCTTTCTTGCAAAGAGGCA GGTCGGCACGGGCCTCATCGACGTGCCATTATGCAATACTACGTCTGATTTTGGTACCAG AGCATGTTCAATAGATAATGTAAAATTAAATCATGTTTGATCAAAGTTTACACTATTAAA AAGTGTTTTTTTTTACATCATCAAAAGCCTCCAACTCTAACAGGTAATGTAAAATAGGTG TTGCAAAATACATCATGGTTGTTTTTATGGGTGTCCCTTTTTACATGCACTTGTTTATGT AAACATAGCTCTGGGTGATGCAAACTTTGCTCGTAAAAGTGTTTGTTTTAGCCAATGCAA TTAAAAGATCGAGCTGATGAAAGAGACTAGACAATACATTTATACGTCAAACACTCTTCA TGTATGGCTCTCTTAGGTCTAAACGTGAATCAAAAGTGAACTGCAATTTAATTGCGCCAA CCATGTCTTGAGTTCTTGAATCCAAGACCTCTTGTCTCTCATACCATGTAGAAATTATAT GATGACTATAATATTTGTGTTGTATTGATCTGACCCTCGCGAGGGATCAGAGCATCTACA ATCGAACCCCTCAAACGTCTG
Protein Sequence (856 aa)
>BART1_0-u29262.003 856 150831_barley_pseudomolecules MRGPPRCALLLLLAAAALVPAARAQGAAAPAPSAGAAFVPRDDILLDCGATGKGNDTDGR QWDGDAGSKYAPPNLASASAGAQDPSVPQVPYLTARVSAAPFTYSFPLGPGRKFLRLHFY PANYSNRDAADAFFSVSVPAAKVTLLSNFSAYQTITALNFAYLVREFSVNVTGQNLDLTF TPEKGRPNAYAFVNGIETMYRLNVGGQAISPSKDSGGARSWDDDTPYIYGAGAGVSYQND PNVTITYPDNVPGYVAPSDVYATARSMGPDKGVNLAYNLTWILQVDAGYQYLVRLHFCEI QSPFTKPNQRVFSIYLNNQTAMKGADVILWADPNGIGTPVYKDYVVSTVGSGTMDFWVAL HPDVETKPQYYDAILNGMEVFKLQLTNGSLVGLNPLPSPDPPVNSGSGNKKSIVVPIVGG VVGGLAVLALGYCCFICKRRRKAAKASGMSDGHSGWLPLSLYGHSHTSSSAKSHATGSYA SSLPSNLCRHFSFAEIKAATKNFDESRILGVGGFGKVYHGEIDGGTTKVAIKRGNPLSEQ GIHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTQNAPLSWR QRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTH VSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPTLAKEEVSLAEWA LHCQKKGILDQIVDPYLKGKIVPQCFKKFAETAEKCVADNGIERPSMGDVLWNLEFALQM QESAEESGSIGCGMSDEGTPLVMVGKKDPNDPSIDSSTTTTTTTSLSMGDQSVASIDSDG LTPSAVFSQIMNPKGR