- Transcript BART1_0-u29262.002
- Transcript IDBART1_0-u29262.002
- Gene IDBART1_0-u29262
Barley RTD
Exon Structure of BART1_0-u29262.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 413785241 | 413784231 | - |
| chr4H | 2 | 413789578 | 413785954 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.5132 | 0.836455 | 1.74505 |
| morex | ETI | 4.89462 | 6.09392 | 3.52104 |
| morex | LEA | 2.06624 | 3.2371 | 0.638361 |
| morex | EPI | 1.2639 | 3.11326 | 2.06483 |
| morex | ROO | 2.87381 | 1.91037 | 1.63809 |
| morex | ROO2 | 5.558 | 5.82047 | 5.26321 |
| morex | NOD | 3.11743 | 4.44779 | 2.85087 |
| morex | RAC | 5.60677 | 9.57147 | 10.6386 |
| morex | INF1 | 9.55399 | 4.08724 | 7.62184 |
| morex | INF2 | 7.37136 | 6.20114 | 6.88347 |
| morex | CAR5 | 16.9882 | 15.829 | 14.4173 |
| morex | CAR15 | 4.63545 | 3.50911 | 3.25102 |
| morex | LEM | 14.3539 | 15.8691 | 13.3325 |
| morex | LOD | 22.9614 | 17.0098 | 17.2479 |
| morex | PAL | 9.93101 | 8.28914 | 8.32902 |
| morex | SEN | 1.5022 | 0.360379 | 1.63537 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g56330.1 | +1 | 0.0 | 1454 | 742/855 (87%) | protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed |
| TAIR PP10 | AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR |
+1 | 0.0 | 1088 | 567/874 (65%) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895 |
| BRACH PP3 | Bradi1g63320.1.p | +1 | 0.0 | 1536 | 787/855 (92%) | pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4636 bp)
>BART1_0-u29262.002 4636 150831_barley_pseudomolecules CTTCTCTTCTCTCTCTTCCAACTCATCACAAATATAATATTTTAAGTCTTACAGCCCGCC TACGTCATCCTATTGTACTTGCTCTAATCCCGCTGCATGTAGCGGAGCCGACGCGTGGCT TCATCCTCCCGCGGCGTCGGCATCGGCGTCCGCCTCTCGGCTGTCGGACGGGACTGATTG CGCCGACCCCGGCGTTGGTGGCCCCGTTGCTTATTCCGAGTTGGCTGGCTCACAGCTTGC ATTTGGCAGCCGGCGGCCGCGGTCTCTGTCTTATGGGACCGTGTTCTGGTGCTAACAACA CGAATCTATCGGCTGTCCACATTATACTACCTGACCTCATGCAATCCCGCGTCGTCTTAG GTACTCCACTGAACCGCTGTCAACGGTCCATGACGAGCGGGCCCCCCACGTCTTCCCCTG CACATGGCCGCGGTTCCCACCACCGAAAAACGGTACCCAAAAAGCTTTTTTTAAAAAGCC CGGGGAAAACGGGACGCGCAAGCGCAACTGAGGCAAGCTGTCCTCCACCGTCACCACACC GCGCGCGCAGCACCCGTACCGTTCCGCGGGGCCCGTCGTCCCGTCGCCCCCACCGGCCAG TGGAACACACCAGGCCACGAGAGTGACACACGCACGCTACCGCGGCGGTGAAAAGAGGCA GAGCAAGCGCAGCGGCAGCACAGCAGTCGTAGAGAGAGCCGAGCGGAGTAGGTCGCCGTT GCCGTTGCTGGCAACCCCACTTTAATGCCGCGCCCGTAGTCCCGAAACCTCTCTCCCCTT CCTTTCTTCCCTGACGCCACCTCGGCCACCACTTTCCCCTCAAATCTCACCTCCTCCGCC ACGCGCTGCCCGCCGCTTCTCTCGCCAGCACGCAAATCCGCCCCCAGATCGGCGCCGGGA GAGCCGTTTCATGGGCGATCTGTGAGCCGCGACGAAACGCAAGCTACTGCCATGAGAGGG CCCCCGAGATGCGCGCTCCTGCTCCTCCTGGCCGCCGCGGCGCTTGTCCCCGCAGCGCGG GCGCAGGGGGCGGCCGCGCCCGCGCCCTCGGCGGGGGCCGCGTTCGTTCCGCGGGACGAC ATCCTGCTCGACTGCGGCGCCACGGGGAAGGGGAACGACACGGACGGCCGCCAGTGGGAC GGCGACGCGGGGTCCAAGTACGCGCCTCCAAACCTCGCCTCGGCCAGCGCCGGGGCGCAG GACCCCTCGGTGCCGCAGGTGCCCTACCTCACCGCGCGGGTGTCGGCGGCGCCCTTCACC TACTCCTTCCCGCTCGGCCCCGGCCGCAAGTTCCTCAGGCTGCACTTCTACCCGGCAAAC TACTCCAACCGCGACGCCGCCGACGCCTTCTTCTCCGTCTCCGTCCCGGCCGCCAAGGTC ACGCTCCTCTCCAACTTCAGCGCCTACCAGACCATAACGGCGCTCAACTTCGCCTACCTC GTGCGCGAGTTCTCCGTCAACGTCACCGGCCAGAACCTCGACCTCACCTTCACTCCGGAG AAGGGCCGCCCCAACGCCTACGCCTTCGTCAACGGCATCGAGGTCGTCTCCTCCCCTGAC CTCTTTGACCTCGCCACGCCGCTCTTCGTCACCGGTGACGGCAACAACCAGCCATTCCCG ATGGATCCTGCTGCTGCTCTGCAGACCATGTATCGGCTCAACGTCGGAGGCCAGGCCATC TCCCCTTCCAAGGACTCCGGCGGGGCTCGCTCATGGGACGACGACACGCCTTACATTTAC GGTGCAGGGGCAGGGGTATCGTACCAGAACGATCCCAATGTCACAATCACCTATCCTGAC AATGTGCCGGGATATGTGGCACCTTCGGATGTCTATGCCACGGCGCGATCAATGGGGCCA GACAAGGGTGTAAACTTGGCCTACAATCTCACCTGGATATTGCAGGTGGATGCTGGGTAC CAATACCTTGTGAGGCTCCATTTCTGTGAGATACAATCCCCATTTACTAAACCCAACCAG CGGGTCTTCAGCATCTACCTCAACAACCAGACTGCCATGAAAGGTGCTGATGTGATCCTG TGGGCGGATCCCAATGGTATTGGTACTCCAGTGTATAAGGACTATGTGGTGAGCACTGTG GGTTCTGGGACTATGGATTTCTGGGTGGCTTTACATCCGGATGTAGAGACGAAGCCGCAG TACTATGATGCTATTCTCAATGGGATGGAGGTGTTCAAGCTGCAACTTACTAATGGGAGC CTCGTGGGGCTCAATCCTCTCCCAAGTCCTGATCCACCAGTGAATAGCGGGTCAGGAAAC AAGAAATCAATAGTCGTGCCGATTGTTGGTGGAGTAGTCGGAGGTTTGGCAGTGCTTGCG CTTGGATATTGCTGCTTCATCTGCAAGCGTCGGAGGAAAGCGGCCAAGGCTAGCGGCATG AGTGATGGCCATTCTGGTTGGCTCCCATTGTCGCTGTATGGCCATTCACACACTTCAAGC TCAGCCAAGTCGCATGCTACAGGCAGTTATGCTTCATCTTTGCCATCCAACCTGTGCCGC CACTTCTCATTTGCGGAGATCAAGGCCGCAACAAAAAACTTTGATGAGTCACGAATCCTT GGTGTTGGTGGGTTCGGTAAAGTTTACCATGGAGAAATTGACGGGGGCACAACTAAGGTG GCTATCAAGCGTGGCAATCCCTTGTCTGAGCAGGGCATACATGAGTTCCAGACTGAAATT GAAATGTTGTCAAAGCTCCGGCACCGTCATCTTGTGTCGCTGATTGGTTACTGCGAGGAG AAGAATGAGATGATCCTGGTCTATGACTACATGGCTCATGGAACCCTGCGTGAGCACCTA TACAAGACCCAGAATGCACCGCTTAGCTGGAGGCAGCGTTTGGAGATCTGCATCGGTGCT GCTCGTGGGCTTCACTACCTTCATACCGGTGCAAAGCACACCATTATCCACCGTGATGTG AAGACGACAAACATCCTCCTGGATGAGAAATGGGTTGCCAAGGTTTCAGATTTTGGTCTG TCCAAGACTGGGCCATCGATGGATCACACACATGTGAGCACAGTTGTCAAGGGCAGTTTT GGTTACCTTGATCCTGAATATTTCCGCAGGCAGCAGCTCACTGAGAAATCTGATGTCTAT TCCTTTGGTGTGGTGCTGTTCGAGGTCCTTTGTGCTCGGCCTGCCTTGAACCCCACTCTT GCAAAGGAAGAAGTTAGCTTGGCAGAGTGGGCATTGCACTGCCAAAAGAAGGGAATTCTT GATCAGATTGTTGATCCCTACCTCAAAGGAAAGATTGTTCCGCAGTGCTTCAAGAAGTTT GCCGAGACGGCTGAGAAGTGTGTTGCCGACAATGGCATTGAGCGCCCTTCGATGGGAGAT GTGCTTTGGAACTTGGAGTTTGCTCTTCAGATGCAGGAAAGCGCGGAGGAGAGCGGAAGC ATTGGCTGTGGGATGTCAGATGAGGGCACTCCCCTCGTGATGGTTGGAAAGAAGGATCCC AATGACCCATCAATTGATTCAAGCACCACGACGACCACAACAACTTCCTTAAGCATGGGT GACCAAAGTGTCGCGAGCATCGACTCGGATGGGCTGACGCCAAGCGCGGTGTTCTCACAG ATCATGAACCCCAAGGGGCGGTGAGAAAGAGTGGAATCGAATAAATCTAGCTCCCAGCTG TTCCGCCGAGAGAATTAGCTTCCGGTGTCCAGTCTGTTGAGTGGAGGAATGAAGATTCGA CAGATGGGTGGAGAGATCATCGTGAAATCGCCCAGTGGGTGGATGGACGACGTTTCGGGA AGCATTGATCATGATGCCGCCCAACCCTAAATCTTGTGCCTGTTCTGATGCGTCTTTGCT GGCCTTGTATATGTCCGTTTGCTTTCTTGCCAAACTTCTATTCCTTTTCTTGAATCATGT AAGGAGGGTTTTTCTGAGAGCCACAAACAGCTGTAGGGAGCACAAGTTGTGTTGCAAACC ACGAGACGTGTCACCCGGTATCTCTTCATGTATATGCTAGCAATATTCTGATTACCAACT TCTGAAGTTCTGGTACCTGCTATCAGCTCGATCTCATCTTTCTTGCAAAGAGGCAGGTCG GCACGGGCCTCATCGACGTGCCATTATGCAATACTACGTCTGATTTTGGTACCAGAGCAT GTTCAATAGATAATGTAAAATTAAATCATGTTTGATCAAAGTTTACACTATTAAAAAGTG TTTTTTTTTACATCATCAAAAGCCTCCAACTCTAACAGGTAATGTAAAATAGGTGTTGCA AAATACATCATGGTTGTTTTTATGGGTGTCCCTTTTTACATGCACTTGTTTATGTAAACA TAGCTCTGGGTGATGCAAACTTTGCTCGTAAAAGTGTTTGTTTTAGCCAATGCAATTAAA AGATCGAGCTGATGAAAGAGACTAGACAATACATTTATACGTCAAACACTCTTCATGTAT GGCTCTCTTAGGTCTAAACGTGAATCAAAAGTGAACTGCAATTTAATTGCGCCAACCATG TCTTGAGTTCTTGAATCCAAGACCTCTTGTCTCTCATACCATGTAGAAATTATATGATGA CTATAATATTTGTGTTGTATTGATCTGACCCTCGCGAGGGATCAGAGCATCTACAATCGA ACCCCTCAAACGTCTG
Protein Sequence (890 aa)
>BART1_0-u29262.002 890 150831_barley_pseudomolecules MRGPPRCALLLLLAAAALVPAARAQGAAAPAPSAGAAFVPRDDILLDCGATGKGNDTDGR QWDGDAGSKYAPPNLASASAGAQDPSVPQVPYLTARVSAAPFTYSFPLGPGRKFLRLHFY PANYSNRDAADAFFSVSVPAAKVTLLSNFSAYQTITALNFAYLVREFSVNVTGQNLDLTF TPEKGRPNAYAFVNGIEVVSSPDLFDLATPLFVTGDGNNQPFPMDPAAALQTMYRLNVGG QAISPSKDSGGARSWDDDTPYIYGAGAGVSYQNDPNVTITYPDNVPGYVAPSDVYATARS MGPDKGVNLAYNLTWILQVDAGYQYLVRLHFCEIQSPFTKPNQRVFSIYLNNQTAMKGAD VILWADPNGIGTPVYKDYVVSTVGSGTMDFWVALHPDVETKPQYYDAILNGMEVFKLQLT NGSLVGLNPLPSPDPPVNSGSGNKKSIVVPIVGGVVGGLAVLALGYCCFICKRRRKAAKA SGMSDGHSGWLPLSLYGHSHTSSSAKSHATGSYASSLPSNLCRHFSFAEIKAATKNFDES RILGVGGFGKVYHGEIDGGTTKVAIKRGNPLSEQGIHEFQTEIEMLSKLRHRHLVSLIGY CEEKNEMILVYDYMAHGTLREHLYKTQNAPLSWRQRLEICIGAARGLHYLHTGAKHTIIH RDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKS DVYSFGVVLFEVLCARPALNPTLAKEEVSLAEWALHCQKKGILDQIVDPYLKGKIVPQCF KKFAETAEKCVADNGIERPSMGDVLWNLEFALQMQESAEESGSIGCGMSDEGTPLVMVGK KDPNDPSIDSSTTTTTTTSLSMGDQSVASIDSDGLTPSAVFSQIMNPKGR