- Transcript BART1_0-u29262.001
- Transcript IDBART1_0-u29262.001
- Gene IDBART1_0-u29262
Barley RTD
Exon Structure of BART1_0-u29262.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 413785241 | 413784231 | - |
| chr4H | 2 | 413789578 | 413785949 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.54163 | 14.1554 | 17.988 |
| morex | ETI | 5.22431 | 10.883 | 8.0163 |
| morex | LEA | 10.4523 | 2.20695 | 6.38774 |
| morex | EPI | 3.11622 | 8.00754 | 5.49788 |
| morex | ROO | 14.0655 | 5.46145 | 3.95265 |
| morex | ROO2 | 35.5558 | 31.7856 | 38.3522 |
| morex | NOD | 17.0274 | 10.4248 | 16.5542 |
| morex | RAC | 49.8272 | 55.4157 | 54.4824 |
| morex | INF1 | 23.0794 | 23.3571 | 18.2828 |
| morex | INF2 | 32.7746 | 23.985 | 26.2931 |
| morex | CAR5 | 51.4829 | 41.5444 | 54.386 |
| morex | CAR15 | 14.9085 | 13.6357 | 17.7803 |
| morex | LEM | 77.4373 | 80.2752 | 65.4418 |
| morex | LOD | 97.3592 | 53.718 | 89.8118 |
| morex | PAL | 65.9595 | 48.8451 | 51.669 |
| morex | SEN | 2.46666 | 2.56699 | 1.07511 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g56330.1 | +1 | 0.0 | 1453 | 742/855 (87%) | protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed |
| TAIR PP10 | AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR |
+1 | 0.0 | 1088 | 567/874 (65%) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895 |
| BRACH PP3 | Bradi1g63320.1.p | +1 | 0.0 | 1536 | 787/855 (92%) | pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4641 bp)
>BART1_0-u29262.001 4641 150831_barley_pseudomolecules CTTCTCTTCTCTCTCTTCCAACTCATCACAAATATAATATTTTAAGTCTTACAGCCCGCC TACGTCATCCTATTGTACTTGCTCTAATCCCGCTGCATGTAGCGGAGCCGACGCGTGGCT TCATCCTCCCGCGGCGTCGGCATCGGCGTCCGCCTCTCGGCTGTCGGACGGGACTGATTG CGCCGACCCCGGCGTTGGTGGCCCCGTTGCTTATTCCGAGTTGGCTGGCTCACAGCTTGC ATTTGGCAGCCGGCGGCCGCGGTCTCTGTCTTATGGGACCGTGTTCTGGTGCTAACAACA CGAATCTATCGGCTGTCCACATTATACTACCTGACCTCATGCAATCCCGCGTCGTCTTAG GTACTCCACTGAACCGCTGTCAACGGTCCATGACGAGCGGGCCCCCCACGTCTTCCCCTG CACATGGCCGCGGTTCCCACCACCGAAAAACGGTACCCAAAAAGCTTTTTTTAAAAAGCC CGGGGAAAACGGGACGCGCAAGCGCAACTGAGGCAAGCTGTCCTCCACCGTCACCACACC GCGCGCGCAGCACCCGTACCGTTCCGCGGGGCCCGTCGTCCCGTCGCCCCCACCGGCCAG TGGAACACACCAGGCCACGAGAGTGACACACGCACGCTACCGCGGCGGTGAAAAGAGGCA GAGCAAGCGCAGCGGCAGCACAGCAGTCGTAGAGAGAGCCGAGCGGAGTAGGTCGCCGTT GCCGTTGCTGGCAACCCCACTTTAATGCCGCGCCCGTAGTCCCGAAACCTCTCTCCCCTT CCTTTCTTCCCTGACGCCACCTCGGCCACCACTTTCCCCTCAAATCTCACCTCCTCCGCC ACGCGCTGCCCGCCGCTTCTCTCGCCAGCACGCAAATCCGCCCCCAGATCGGCGCCGGGA GAGCCGTTTCATGGGCGATCTGTGAGCCGCGACGAAACGCAAGCTACTGCCATGAGAGGG CCCCCGAGATGCGCGCTCCTGCTCCTCCTGGCCGCCGCGGCGCTTGTCCCCGCAGCGCGG GCGCAGGGGGCGGCCGCGCCCGCGCCCTCGGCGGGGGCCGCGTTCGTTCCGCGGGACGAC ATCCTGCTCGACTGCGGCGCCACGGGGAAGGGGAACGACACGGACGGCCGCCAGTGGGAC GGCGACGCGGGGTCCAAGTACGCGCCTCCAAACCTCGCCTCGGCCAGCGCCGGGGCGCAG GACCCCTCGGTGCCGCAGGTGCCCTACCTCACCGCGCGGGTGTCGGCGGCGCCCTTCACC TACTCCTTCCCGCTCGGCCCCGGCCGCAAGTTCCTCAGGCTGCACTTCTACCCGGCAAAC TACTCCAACCGCGACGCCGCCGACGCCTTCTTCTCCGTCTCCGTCCCGGCCGCCAAGGTC ACGCTCCTCTCCAACTTCAGCGCCTACCAGACCATAACGGCGCTCAACTTCGCCTACCTC GTGCGCGAGTTCTCCGTCAACGTCACCGGCCAGAACCTCGACCTCACCTTCACTCCGGAG AAGGGCCGCCCCAACGCCTACGCCTTCGTCAACGGCATCGAGGTCGTCTCCTCCCCTGAC CTCTTTGACCTCGCCACGCCGCTCTTCGTCACCGGTGACGGCAACAACCAGCCATTCCCG ATGGATCCTGCTGCTGCTCTGCAGACCATGTATCGGCTCAACGTCGGAGGCCAGGCCATC TCCCCTTCCAAGGACTCCGGCGGGGCTCGCTCATGGGACGACGACACGCCTTACATTTAC GGTGCAGGGGCAGGGGTATCGTACCAGAACGATCCCAATGTCACAATCACCTATCCTGAC AATGTGCCGGGATATGTGGCACCTTCGGATGTCTATGCCACGGCGCGATCAATGGGGCCA GACAAGGGTGTAAACTTGGCCTACAATCTCACCTGGATATTGCAGGTGGATGCTGGGTAC CAATACCTTGTGAGGCTCCATTTCTGTGAGATACAATCCCCATTTACTAAACCCAACCAG CGGGTCTTCAGCATCTACCTCAACAACCAGACTGCCATGAAAGGTGCTGATGTGATCCTG TGGGCGGATCCCAATGGTATTGGTACTCCAGTGTATAAGGACTATGTGGTGAGCACTGTG GGTTCTGGGACTATGGATTTCTGGGTGGCTTTACATCCGGATGTAGAGACGAAGCCGCAG TACTATGATGCTATTCTCAATGGGATGGAGGTGTTCAAGCTGCAACTTACTAATGGGAGC CTCGTGGGGCTCAATCCTCTCCCAAGTCCTGATCCACCAGTGAATAGCGGGTCAGGAAAC AAGAAATCAATAGTCGTGCCGATTGTTGGTGGAGTAGTCGGAGGTTTGGCAGTGCTTGCG CTTGGATATTGCTGCTTCATCTGCAAGCGTCGGAGGAAAGCGGCCAAGGCTAGCGGCATG AGTGATGGCCATTCTGGTTGGCTCCCATTGTCGCTGTATGGCCATTCACACACTTCAAGC TCAGCCAAGTCGCATGCTACAGGCAGTTATGCTTCATCTTTGCCATCCAACCTGTGCCGC CACTTCTCATTTGCGGAGATCAAGGCCGCAACAAAAAACTTTGATGAGTCACGAATCCTT GGTGTTGGTGGGTTCGGTAAAGTTTACCATGGAGAAATTGACGGGGGCACAACTAAGGTG GCTATCAAGCGTGGCAATCCCTTGTCTGAGCAGGGCATACATGAGTTCCAGACTGAAATT GAAATGTTGTCAAAGCTCCGGCACCGTCATCTTGTGTCGCTGATTGGTTACTGCGAGGAG AAGAATGAGATGATCCTGGTCTATGACTACATGGCTCATGGAACCCTGCGTGAGCACCTA TACAAGACCCAGAATGCACCGCTTAGCTGGAGGCAGCGTTTGGAGATCTGCATCGGTGCT GCTCGTGGGCTTCACTACCTTCATACCGGTGCAAAGCACACCATTATCCACCGTGATGTG AAGACGACAAACATCCTCCTGGATGAGAAATGGGTTGCCAAGGTTTCAGATTTTGGTCTG TCCAAGACTGGGCCATCGATGGATCACACACATGTGAGCACAGTTGTCAAGGGCAGTTTT GGTTACCTTGATCCTGAATATTTCCGCAGGCAGCAGCTCACTGAGAAATCTGATGTCTAT TCCTTTGGTGTGGTGCTGTTCGAGGTCCTTTGTGCTCGGCCTGCCTTGAACCCCACTCTT GCAAAGGAAGAAGTTAGCTTGGCAGAGTGGGCATTGCACTGCCAAAAGAAGGGAATTCTT GATCAGATTGTTGATCCCTACCTCAAAGGAAAGATTGTTCCGCAGTGCTTCAAGAAGTTT GCCGAGACGGCTGAGAAGTGTGTTGCCGACAATGGCATTGAGCGCCCTTCGATGGGAGAT GTGCTTTGGAACTTGGAGTTTGCTCTTCAGATGCAGGAAAGCGCGGAGGAGAGCGGAAGC ATTGGCTGTGGGATGTCAGATGAGGGCACTCCCCTCGTGATGGTTGGAAAGAAGGATCCC AATGACCCATCAATTGATTCAAGCACCACGACGACCACAACAACTTCCTTAAGCATGGGT GACCAAAGTGTCGCGAGCATCGACTCGGATGGGCTGACGCCAAGCGCGGTGTTCTCACAG ATCATGAACCCCAAGGGGCGGTGAGGTGAGAAAGAGTGGAATCGAATAAATCTAGCTCCC AGCTGTTCCGCCGAGAGAATTAGCTTCCGGTGTCCAGTCTGTTGAGTGGAGGAATGAAGA TTCGACAGATGGGTGGAGAGATCATCGTGAAATCGCCCAGTGGGTGGATGGACGACGTTT CGGGAAGCATTGATCATGATGCCGCCCAACCCTAAATCTTGTGCCTGTTCTGATGCGTCT TTGCTGGCCTTGTATATGTCCGTTTGCTTTCTTGCCAAACTTCTATTCCTTTTCTTGAAT CATGTAAGGAGGGTTTTTCTGAGAGCCACAAACAGCTGTAGGGAGCACAAGTTGTGTTGC AAACCACGAGACGTGTCACCCGGTATCTCTTCATGTATATGCTAGCAATATTCTGATTAC CAACTTCTGAAGTTCTGGTACCTGCTATCAGCTCGATCTCATCTTTCTTGCAAAGAGGCA GGTCGGCACGGGCCTCATCGACGTGCCATTATGCAATACTACGTCTGATTTTGGTACCAG AGCATGTTCAATAGATAATGTAAAATTAAATCATGTTTGATCAAAGTTTACACTATTAAA AAGTGTTTTTTTTTACATCATCAAAAGCCTCCAACTCTAACAGGTAATGTAAAATAGGTG TTGCAAAATACATCATGGTTGTTTTTATGGGTGTCCCTTTTTACATGCACTTGTTTATGT AAACATAGCTCTGGGTGATGCAAACTTTGCTCGTAAAAGTGTTTGTTTTAGCCAATGCAA TTAAAAGATCGAGCTGATGAAAGAGACTAGACAATACATTTATACGTCAAACACTCTTCA TGTATGGCTCTCTTAGGTCTAAACGTGAATCAAAAGTGAACTGCAATTTAATTGCGCCAA CCATGTCTTGAGTTCTTGAATCCAAGACCTCTTGTCTCTCATACCATGTAGAAATTATAT GATGACTATAATATTTGTGTTGTATTGATCTGACCCTCGCGAGGGATCAGAGCATCTACA ATCGAACCCCTCAAACGTCTG
Protein Sequence (890 aa)
>BART1_0-u29262.001 890 150831_barley_pseudomolecules MRGPPRCALLLLLAAAALVPAARAQGAAAPAPSAGAAFVPRDDILLDCGATGKGNDTDGR QWDGDAGSKYAPPNLASASAGAQDPSVPQVPYLTARVSAAPFTYSFPLGPGRKFLRLHFY PANYSNRDAADAFFSVSVPAAKVTLLSNFSAYQTITALNFAYLVREFSVNVTGQNLDLTF TPEKGRPNAYAFVNGIEVVSSPDLFDLATPLFVTGDGNNQPFPMDPAAALQTMYRLNVGG QAISPSKDSGGARSWDDDTPYIYGAGAGVSYQNDPNVTITYPDNVPGYVAPSDVYATARS MGPDKGVNLAYNLTWILQVDAGYQYLVRLHFCEIQSPFTKPNQRVFSIYLNNQTAMKGAD VILWADPNGIGTPVYKDYVVSTVGSGTMDFWVALHPDVETKPQYYDAILNGMEVFKLQLT NGSLVGLNPLPSPDPPVNSGSGNKKSIVVPIVGGVVGGLAVLALGYCCFICKRRRKAAKA SGMSDGHSGWLPLSLYGHSHTSSSAKSHATGSYASSLPSNLCRHFSFAEIKAATKNFDES RILGVGGFGKVYHGEIDGGTTKVAIKRGNPLSEQGIHEFQTEIEMLSKLRHRHLVSLIGY CEEKNEMILVYDYMAHGTLREHLYKTQNAPLSWRQRLEICIGAARGLHYLHTGAKHTIIH RDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKS DVYSFGVVLFEVLCARPALNPTLAKEEVSLAEWALHCQKKGILDQIVDPYLKGKIVPQCF KKFAETAEKCVADNGIERPSMGDVLWNLEFALQMQESAEESGSIGCGMSDEGTPLVMVGK KDPNDPSIDSSTTTTTTTSLSMGDQSVASIDSDGLTPSAVFSQIMNPKGR