solarray - Potato Microarray Database

Source Transcript

DMT400048393

Source Contig ST4.03ch03
Source Gene DMG402018799

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

solarray

Links

Probe CUST_40339_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_40339_PI426222305	JHI_St_60k_v1	DMT400048393	GAGCCATCTCCAGAAAAGATTGAAATTGCAAATTTATTCATGTTCAACTGTACTATCCCT

All Microarray Probes Designed to Gene DMG402018799

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_40324_PI426222305	JHI_St_60k_v1	DMT400048392	TCCAAACAATTCCGACTCAGTATTGCATATTTTTTGAAAGAACAAGAGAGCCATCTCCAG
CUST_40339_PI426222305	JHI_St_60k_v1	DMT400048393	GAGCCATCTCCAGAAAAGATTGAAATTGCAAATTTATTCATGTTCAACTGTACTATCCCT

Microarray Signals from CUST_40339_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	6.15934	3.33568	1.01815	0.552163
ABA 1h	5.46262	3.16496	1.02159	0.591723
ACC 1h	7.3279	4.01295	1.14661	0.631153
BABA 1h	6.17068	3.58675	1.05623	0.612097
Chitin 1h	5.68786	3.31727	1.0462	0.602837
Epi 1h	5.56346	3.23171	1.06269	0.614151
SA 1h	5.67129	3.28959	0.912107	0.528196
Me-JA 1h	5.81032	3.39143	1.1687	0.676695
Control 6h	6.00343	3.48583	0.989549	0.573705
ABA 6h	6.16163	3.57104	0.958233	0.554874
ACC 6h	6.92374	4.11065	0.975245	0.564735
BABA 6h	6.55156	3.8052	0.966347	0.560029
Chitin 6h	6.56007	3.80332	1.01848	0.589725
Epi 6h	6.76059	3.96967	0.978872	0.566822
SA 6h	6.2759	3.64104	1.04968	0.608859
Me-JA 6h	5.87781	3.40558	0.97627	0.565376

Source Transcript PGSC0003DMT400048393 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT1G34040.1	+1	2e-69	234	114/200 (57%)	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr1:12374433-12376179 FORWARD LENGTH=457

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400048393

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