solarray - Potato Microarray Database

Source Transcript

DMT400067599

Source Contig ST4.03ch08
Source Gene DMG400026280

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

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Links

Probe CUST_33237_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_33237_PI426222305	JHI_St_60k_v1	DMT400067599	CTGAAGGAAATTTACATGGCATTTTGGTTGGGTAAGTATCAATTTGATTTTGAGCCATCA

All Microarray Probes Designed to Gene DMG400026280

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_33237_PI426222305	JHI_St_60k_v1	DMT400067599	CTGAAGGAAATTTACATGGCATTTTGGTTGGGTAAGTATCAATTTGATTTTGAGCCATCA
CUST_33144_PI426222305	JHI_St_60k_v1	DMT400067600	GGTGATGAAGGGCTTCTACCATAGAGTTTGTCTACATATTACAACTCTTTATGACTTTAT

Microarray Signals from CUST_33237_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	217.572	45.7107	1.03485	0.143222
ABA 1h	57.6123	21.3507	0.278715	0.0967544
ACC 1h	372.849	116.488	1.61104	0.475453
BABA 1h	269.671	19.815	1.37994	0.0918347
Chitin 1h	239.041	47.0295	1.26559	0.223668
Epi 1h	234.537	36.2537	1.31209	0.172056
SA 1h	300.898	98.9105	1.3158	0.421743
Me-JA 1h	656.506	130.508	3.84467	0.427255
Control 6h	359.976	175.92	1.4243	0.628648
ABA 6h	40.1232	10.5279	0.17545	0.0383161
ACC 6h	85.0482	10.3467	0.362531	0.025597
BABA 6h	203.502	32.4469	0.875373	0.123968
Chitin 6h	239.068	46.9691	1.07483	0.204035
Epi 6h	163.74	55.5839	0.602955	0.402954
SA 6h	75.8363	27.9396	0.33574	0.101543
Me-JA 6h	348.062	69.7626	1.65205	0.247223

Source Transcript PGSC0003DMT400067599 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT1G43710.1	+1	2e-36	133	75/166 (45%)	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr1:16486534-16488298 REVERSE LENGTH=482

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400067599

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