solarray - Potato Microarray Database

Source Transcript

DMT400067587

Source Contig ST4.03ch08
Source Gene DMG400026277

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

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Links

Probe CUST_33174_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_33174_PI426222305	JHI_St_60k_v1	DMT400067587	CCACGTGGGCACCTATATATCTTTAAAATACACTATTAAATAGTGCAGGGGTAATAGATA

All Microarray Probes Designed to Gene DMG400026277

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_33229_PI426222305	JHI_St_60k_v1	DMT400067586	TAAGGTGTTTGTGCATCCAAAGTTCCACTCTCCTAGCAAACCCGATCAATACAGAAAAAA
CUST_33174_PI426222305	JHI_St_60k_v1	DMT400067587	CCACGTGGGCACCTATATATCTTTAAAATACACTATTAAATAGTGCAGGGGTAATAGATA

Microarray Signals from CUST_33174_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	6.30195	3.65462	0.949935	0.550389
ABA 1h	6.05697	3.51243	1.03164	0.597416
ACC 1h	7.60016	4.5188	1.08941	0.631008
BABA 1h	6.62011	3.83609	1.03553	0.599631
Chitin 1h	6.24807	3.62833	1.04548	0.605487
Epi 1h	6.39371	3.56449	1.10981	0.61888
SA 1h	6.25495	3.62912	0.918389	0.532616
Me-JA 1h	6.47926	3.76005	1.19486	0.691865
Control 6h	6.53005	3.78562	0.982638	0.569466
ABA 6h	7.14136	3.88924	1.00491	0.552194
ACC 6h	7.82868	4.64487	1.00616	0.582638
BABA 6h	9.09341	4.17745	1.1887	0.58765
Chitin 6h	7.15861	4.15412	1.01428	0.588423
Epi 6h	7.89977	4.64394	1.0435	0.605511
SA 6h	6.96028	4.04099	1.06093	0.615588
Me-JA 6h	6.49924	3.76537	0.984215	0.569929

Source Transcript PGSC0003DMT400067587 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT2G36690.1	+3	6e-44	102	43/105 (41%)	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr2:15379930-15381987 FORWARD LENGTH=366

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400067587

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