Probe CUST_2200_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2200_PI426222305 | JHI_St_60k_v1 | DMT400072448 | CTCTAATACTCTCATAAAATTCAGCCTCGAAGAATTCTCTAATTTCTTCAAATGGGTGAG |
All Microarray Probes Designed to Gene DMG400028185
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2200_PI426222305 | JHI_St_60k_v1 | DMT400072448 | CTCTAATACTCTCATAAAATTCAGCCTCGAAGAATTCTCTAATTTCTTCAAATGGGTGAG |
| CUST_2087_PI426222305 | JHI_St_60k_v1 | DMT400072449 | ATTTCAATTTTTCGTGTGGAAGACGTGAAGGCGGATGCCAGTAGTGGAAAATTGACGGTG |
Microarray Signals from CUST_2200_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 5.59703 | 3.25195 | 0.954965 | 0.553631 |
| ABA 1h | 5.93406 | 3.09096 | 1.13665 | 0.603305 |
| ACC 1h | 6.52437 | 3.81547 | 1.07609 | 0.623134 |
| BABA 1h | 5.98282 | 3.47317 | 1.05871 | 0.613076 |
| Chitin 1h | 5.54646 | 3.23134 | 1.06286 | 0.607166 |
| Epi 1h | 6.42388 | 3.17148 | 1.25491 | 0.639939 |
| SA 1h | 5.53784 | 3.21392 | 0.920803 | 0.533858 |
| Me-JA 1h | 6.40917 | 3.30518 | 1.32777 | 0.693702 |
| Control 6h | 5.80929 | 3.37096 | 0.989705 | 0.573541 |
| ABA 6h | 5.964 | 3.45655 | 0.958354 | 0.554944 |
| ACC 6h | 6.72231 | 3.99315 | 0.978409 | 0.566997 |
| BABA 6h | 6.34879 | 3.68535 | 0.967892 | 0.560697 |
| Chitin 6h | 6.34709 | 3.68081 | 1.0185 | 0.590077 |
| Epi 6h | 6.55815 | 3.84622 | 0.982287 | 0.568799 |
| SA 6h | 6.07135 | 3.51674 | 1.04937 | 0.607762 |
| Me-JA 6h | 5.68171 | 3.29467 | 0.975302 | 0.565349 |
Source Transcript PGSC0003DMT400072448 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc10g084000.1 | +1 | 1e-81 | 264 | 145/216 (67%) | evidence_code:10F0H0E1IEG genomic_reference:SL2.50ch10 gene_region:63001705-63003208 transcript_region:SL2.50ch10:63001705..63003208+ go_terms:GO:0030001 functional_description:Heavy-metal-associated domain-containing protein-like (AHRD V1 *-*- Q6K9R4_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein |
| TAIR PP10 | AT5G60800.2 | +2 | 2e-21 | 96 | 43/71 (61%) | Heavy metal transport/detoxification superfamily protein | chr5:24460822-24462464 REVERSE LENGTH=302 |