Probe CUST_2099_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2099_PI426222305 | JHI_St_60k_v1 | DMT400028718 | TGAGCTAGTGGCTAAGTGCAAGAATTTTGTTAATGTCATGGCTAGCGATGGTGGTGACCA |
All Microarray Probes Designed to Gene DMG400011052
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2045_PI426222305 | JHI_St_60k_v1 | DMT400028717 | CAGGATGTTGAGGTCCGAATTAGGCTCACTCTTTGATTATAAAGATCTTGTAGTAACGGA |
| CUST_2099_PI426222305 | JHI_St_60k_v1 | DMT400028718 | TGAGCTAGTGGCTAAGTGCAAGAATTTTGTTAATGTCATGGCTAGCGATGGTGGTGACCA |
Microarray Signals from CUST_2099_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 2687.75 | 384.777 | 3.64225 | 0.284853 |
| ABA 1h | 2722.23 | 227.094 | 4.22619 | 0.244047 |
| ACC 1h | 1945.38 | 170.234 | 2.59942 | 0.150185 |
| BABA 1h | 1729.53 | 397.775 | 2.32485 | 0.388741 |
| Chitin 1h | 1422.5 | 170.976 | 2.15478 | 0.190957 |
| Epi 1h | 1563.46 | 90.4732 | 2.49496 | 0.144133 |
| SA 1h | 1746.89 | 284.064 | 2.29586 | 0.239051 |
| Me-JA 1h | 1340.48 | 147.35 | 2.24591 | 0.129785 |
| Control 6h | 210.13 | 29.0943 | 0.283865 | 0.0170579 |
| ABA 6h | 181.339 | 15.5225 | 0.234342 | 0.0239566 |
| ACC 6h | 150.814 | 32.6056 | 0.173243 | 0.0194832 |
| BABA 6h | 156.029 | 13.2671 | 0.191408 | 0.0216532 |
| Chitin 6h | 202.189 | 17.7994 | 0.260614 | 0.0248036 |
| Epi 6h | 165.383 | 19.5551 | 0.200011 | 0.0354698 |
| SA 6h | 130.837 | 29.2003 | 0.174711 | 0.0284198 |
| Me-JA 6h | 155.856 | 26.2605 | 0.209984 | 0.0197333 |
Source Transcript PGSC0003DMT400028718 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc10g084430.1 | +2 | 2e-153 | 442 | 265/302 (88%) | evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63296174-63297477 transcript_region:SL2.50ch10:63296174..63297477- go_terms:GO:0008270 functional_description:RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type |
| TAIR PP10 | AT5G02750.1 | +2 | 1e-54 | 186 | 131/287 (46%) | RING/U-box superfamily protein | chr5:620101-620952 FORWARD LENGTH=283 |