Probe CUST_2045_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2045_PI426222305 | JHI_St_60k_v1 | DMT400028717 | CAGGATGTTGAGGTCCGAATTAGGCTCACTCTTTGATTATAAAGATCTTGTAGTAACGGA |
All Microarray Probes Designed to Gene DMG400011052
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2045_PI426222305 | JHI_St_60k_v1 | DMT400028717 | CAGGATGTTGAGGTCCGAATTAGGCTCACTCTTTGATTATAAAGATCTTGTAGTAACGGA |
| CUST_2099_PI426222305 | JHI_St_60k_v1 | DMT400028718 | TGAGCTAGTGGCTAAGTGCAAGAATTTTGTTAATGTCATGGCTAGCGATGGTGGTGACCA |
Microarray Signals from CUST_2045_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 778.178 | 83.5917 | 4.22001 | 0.244425 |
| ABA 1h | 858.403 | 115.636 | 5.21729 | 0.416931 |
| ACC 1h | 453.216 | 104.942 | 2.27122 | 0.442671 |
| BABA 1h | 449.232 | 123.364 | 2.31216 | 0.559015 |
| Chitin 1h | 327.304 | 22.9951 | 1.98631 | 0.179784 |
| Epi 1h | 452.022 | 26.3308 | 2.86249 | 0.166692 |
| SA 1h | 429.736 | 45.0159 | 2.26757 | 0.132338 |
| Me-JA 1h | 434.148 | 73.0622 | 2.8385 | 0.226772 |
| Control 6h | 67.5868 | 9.36142 | 0.362432 | 0.030153 |
| ABA 6h | 68.42 | 12.9363 | 0.341485 | 0.0797268 |
| ACC 6h | 52.4098 | 5.26404 | 0.248143 | 0.0252244 |
| BABA 6h | 60.5415 | 9.76768 | 0.288142 | 0.0590542 |
| Chitin 6h | 78.3633 | 6.10894 | 0.401985 | 0.0353263 |
| Epi 6h | 63.761 | 8.78883 | 0.304182 | 0.0572479 |
| SA 6h | 70.6375 | 8.0024 | 0.386262 | 0.0317193 |
| Me-JA 6h | 59.2436 | 18.2579 | 0.289916 | 0.0852025 |
Source Transcript PGSC0003DMT400028717 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc10g084430.1 | +1 | 6e-52 | 175 | 95/111 (86%) | evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63296174-63297477 transcript_region:SL2.50ch10:63296174..63297477- go_terms:GO:0008270 functional_description:RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type |
| TAIR PP10 | AT5G02750.1 | +1 | 1e-33 | 126 | 50/72 (69%) | RING/U-box superfamily protein | chr5:620101-620952 FORWARD LENGTH=283 |