solarray - Potato Microarray Database

Source Transcript

DMT400009900

Source Contig ST4.03ch08
Source Gene DMG400003880

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

solarray

Links

Probe CUST_28527_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_28527_PI426222305	JHI_St_60k_v1	DMT400009900	CGACAAGACAAACTATTTATCATAAGGATAGGTGTCAAATGAAAGCGCAATGAAAGAACT

All Microarray Probes Designed to Gene DMG400003880

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_28527_PI426222305	JHI_St_60k_v1	DMT400009900	CGACAAGACAAACTATTTATCATAAGGATAGGTGTCAAATGAAAGCGCAATGAAAGAACT
CUST_28587_PI426222305	JHI_St_60k_v1	DMT400009899	CGAGGTAAGAGATAATTTTCGAGTTTAAATTTTATATACTGACCTGACCTGACGTACACT

Microarray Signals from CUST_28527_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	11.3193	3.19325	0.89425	0.307507
ABA 1h	22.4534	3.33576	2.14273	0.328228
ACC 1h	14.5887	4.24941	1.07165	0.366125
BABA 1h	14.1617	4.36802	1.0847	0.37302
Chitin 1h	9.286	4.13467	0.741039	0.343111
Epi 1h	15.9177	3.26298	1.5491	0.327915
SA 1h	16.8753	6.1479	1.22366	0.39234
Me-JA 1h	18.785	6.36473	1.68735	0.866767
Control 6h	8.51389	3.4241	0.658884	0.315644
ABA 6h	34.9404	4.8095	2.73761	0.324789
ACC 6h	12.7714	4.08641	0.906978	0.337277
BABA 6h	7.5816	3.81091	0.556884	0.291577
Chitin 6h	8.76303	3.71188	0.655105	0.317531
Epi 6h	6.53508	3.8293	0.487471	0.282652
SA 6h	8.47973	3.56028	0.698998	0.318975
Me-JA 6h	10.8323	3.7645	0.820368	0.330606

Source Transcript PGSC0003DMT400009900 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT2G36690.1	+2	1e-157	458	227/381 (60%)	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr2:15379930-15381987 FORWARD LENGTH=366

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009900

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