Microarray Probes on PGSC0003DMT400063327
Probe ID | Chip | Probe Sequence |
---|
CUST_12949_PI426222305 |
JHI_St_60k_v1 |
CTGGATTATTCATGAGCAAACATAATCATGCTACATTATTCCTTCTTCACAGGTACAACA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400063327
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400063327 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G02150.2 |
+2 |
8e-45 |
162 |
107/271 (39%) |
plastid transcription factor 1 | chr3:391522-392589 FORWARD LENGTH=355 |
Transcript Sequence (1427 bp)
>PGSC0003DMT400063327 1427 pgsc_dm_v3.4
AACTTATCCTTGTAAATTTATTCTCTCTTGGTCATATTTGGTCCATAAACTCATTTTCGC
CCCAAGGCTGGGGGAAATTATTATAAAAGAAGTTGAATGTTATCAAGAGTTGTTAATTCC
ATGTTGAGGTTTTGCTAGCCACTCAGATATATACAAGTTGTAGTTTATCTTCTACAAAAC
CTAATTATATCGATGATGATGATGAACGATATATGACACACATATATATATCATGAATTC
ATCAAGTGGAAATAATTTTCAGACGAAGCAAGAATCCAATGATAGTAAATTGAGCTCAAA
GACGACTAGTGCACCATCAAGTTCAAGGCAATGGGGAGTTAATAAAAACCCAAGAATAGT
ACGCGTATCGCGTACTTTTGGAGGGAAAGATAGGCATAGTAAGGTGTGCACGATAAGGGG
GCTTAGAGATCGAAGAATTAGACTTTCAGTTCCAACTGCAATTCAATTGTATGATCTTCA
AGACAGGCTTGGCCTGAGCCAACCTAGTAAAGTTGTAGATTGGCTACTAGAAGCAACTAA
ACTTGATATCGATACTCTTCCACCACTTCCTGTACCACCTGAATACTTCACTAGGTTTCA
ACAACCACCCCATGAGGAGTACTCTGATCTCCAACAAGTTCGTTCTCAATGGTTCAACGC
GAATAGTGCACCTTATTTGGATCATGGAAAAAACAAGTCAATTGCTTCAAATCATCATGA
GGAATCAAATCAAGAGGATAATCATGTCTTTACATTAGGCAATCATCGATCATCTAATTT
ACCAGCCATGCCTTTCAATTCTTATAACTATCAATGGGATGATCAGCCTAATTCGAATTT
GTCTTTAGGTCATTTTGGACACAATAATTCATTCTCATCCCAAATAGATGATGATCATCA
ATCTCATCAAAATACTAGTTTCCCTCTATCATTGGGATCATCATCTTCGCCTTTTCCTTC
CAGTTCTCAATTGTATTTCAATCCAATAACAACAACATTTCAACCTATAGTTCCATCTCC
TAATTATATGACAAATCATCATCCCATTGATCCCAGGGCTAATATGAACCATTTCAATTT
CTTAAGCTCAAATACTTCACACAATAATCCACTTGTGATGCCAACTCTTAATTTGATCAG
TTCCCAAATAAAACCCTTTAGTCTCAATGATGATCCTAGATGGATGAGTTCAAGAGATGA
TGATGATGACGATGATGATGATGATGATGATGATGATAACCAACCACATGAAGGTCGCGC
AATTTAATTCTAAATCAAGTGAAGGAAATGAATCTTCGTCTTTACTTCAAATATTTTGAA
TTAAAGTTGTTGTCCTGGATTATTCATGAGCAAACATAATCATGCTACATTATTCCTTCT
TCACAGGTACAACAAATAATTAAAGTGAATCATTCTATTTCTTGTTC