barSeed - Barley Seed Development Database

Probe CUST_9979_PI390587928

Source Contig U35_15410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9979_PI390587928	Hv_44K_v2	GCCTAGGACATGTAAATGATGAGAATTGATCATCCTCATATTCTTTGTAGTGCTTATACT	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248248.1	784	2e-24	677 - 736	100	60 / 60	plus	ABC03423 ABC03429 ABC03431 ABC03433 ABC53014
MLOC	MLOC_60738.1	233	2e-24	133 - 192	100	60 / 60	minus	ABC03429
MLOC	MLOC_78997.1	800	7e-23	643 - 702	98	59 / 60	plus	ABC03423 ABC03429 ABC03431 ABC03433 ABC53014
JLOC1	JLOC1_52645.1	706	4e-23	626 - 685	98	59 / 60	plus
Harvest21	ABC03429	555	3e-25	454 - 513	100	60 / 60	plus	ABC03429
Harvest35	U35_15410	742	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_15410 742 Hv_44K_v2
CAACAAACAGCAAGTAGCAATCATCTAGTTGCAGCATCTGTAGCTTCCTTTTCTTCTTCG
TCTACCTTCCGCGGCTAGCTGATTAATAGCAACCATGATGACCACGAGCTCCTTCGCCGG
TGCCGCCGTCCTGCCGCGTGGCTCGGCCGGTCACTTCGGTGTCCAGTCTATGCCTGCGCT
GGCCCGTCGCGCCCTCGTCGTCAGGGCACAAACCGAAGGCCCGAGCTCACCACAGCCAAG
CAAACCCAAGGCGAGCACCTCGATCTGGGACGCGCTGGCGTTCAGCGGCCCAGCGCCGGA
GCGCATCAACGGGCGGCTCGCCATGGTAGGCTTCGTGACTGCGCTCGCCGTGGAGGCAGG
ACGCGGCGACGGGCTCCTCTCGCAGCTCGGCAGCGGCACCGGGCAGGCGTGGTTCGCCTA
CTCCGTGGCCGTGCTGTCCGTGGCGTCGCTGGTGCCACTGCTCCAGGGCGAGAGCGCCGA
GGGCAGAGCCGGCACCATCATGAACGCCAACGCGGAGCTCTGGAACGGCCGCTTCGCCAT
GCTCGGTCTCGTCGCGCTCGCCGCCACCGAGATCATCACCGGCGCGCCCTTCATCAACGT
GTAAAACTAGCTCTGTCGTCGGCCGGATAACACAGCCTCTGCCTAGGACATGTAAATGAT
GAGAATTGATCATCCTCATATTCTTTGTAGTGCTTATACTAATTAAAGACAGCTCATACA
CTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None