barSeed - Barley Seed Development Database

Probe CUST_9976_PI390587928

Source Contig U35_15413

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9976_PI390587928	Hv_44K_v2	TAGCTTTTTTCTGCTCTTTCGTGCACCTTCCATCCGCAGTTGATTAATGGCGACCATGAT	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373058	756	2e-24	72 - 131	100	60 / 60	plus	ABC03423 ABC03429 ABC03431 ABC03433 ABC53014
MLOC	MLOC_43422.1	373	2e-24	177 - 236	100	60 / 60	plus	ABC53014
JLOC1	JLOC1_28074.1	267	8e-25	71 - 130	100	60 / 60	plus
Harvest21	ABC03428	584	3e-25	44 - 103	100	60 / 60	plus
Harvest35	U35_15413	585	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_15413 585 Hv_44K_v2
CAGCACTGTAGTAGCAATCATCTTTACCCTGTTGCAGCATCTGTAGCTTTTTTCTGCTCT
TTCGTGCACCTTCCATCCGCAGTTGATTAATGGCGACCATGATGGCCATGAGCTCCTTCG
CCGGTGCGGCCGTCTTGCCGCGCGGCTCGGCCAGGTCTCTGCCAGCGCTGGGCCGACGTA
CCCTCGTCGTCAGGGCACAGACCGAGGGCCCGAACGCACCACCGCCAAACAAACCCAAGG
CGAGCACCTCCATCTGGGACGCGATGGCGTTCAGCGGCCCTGCGCCGGAGCGCATCAACG
GGCGGCTAGCCATGGTGGGCTTCGTGACGGCGCTGGCTGTGGAGGCAGGCCGCGGCGACG
GGCTCCTCTCGCAGCTCGGCAGCGGCACCGGGCAGGCGTGGTTCGCCTACACCGTGGCGA
TGCTGTCCATGGCGTCGCTGGTGCCGCTGCTCCAGGGCGAGAGCGCCGAGGGCAGAGCCG
GCGCCATCATGAACGCCAACGCGGAGCTCTGGAACGGCCGCTTCGCCATGATCGGACTCG
TCGCGCTCGCCGCCACCGAGATCATCACCGGCACCCCCTTCATCA

Homology of Contig U35_15413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g55600.1	168	7e-51
Arabidopsis v10	None