barSeed - Barley Seed Development Database

Probe CUST_9972_PI390587928

Source Contig U35_15417

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9972_PI390587928	Hv_44K_v2	CTGATCATCCTCTTATTGTAGTACGTATGTAGTATTGCTAATTAAAGACGGGTATCTTTC	451	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.213	0.201	0.335	2.076	2.804	3.418
Raw	2.672	4.373	11.175	107.314	49.089	68.842

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367491	760	2e-24	692 - 751	100	60 / 60	plus	ABC03423 ABC03427 ABC03429 ABC03430 ABC03431 ABC03433 ABC53014
MLOC	MLOC_80864.1	272	2e-24	186 - 245	100	60 / 60	plus	ABC03433
JLOC1	JLOC1_53826.1	302	8e-25	184 - 243	100	60 / 60	plus
Harvest21	ABC03433	734	3e-25	651 - 710	100	60 / 60	plus	ABC03433
Harvest35	U35_15417	535	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_15417 535 Hv_44K_v2
CGCCAAACAAACCCAAGGCCAGCACCTCGATCTGGGACGCGATGGCGTTCAGCGGCCCGG
CGCCGGAGCGCATCAACGGGCGGCTAGCCATGGTAGGCTTCGTAACGGCACTTGCGGTGG
AGGCAGGTCGCGGCGACGGGCTCCTCTCGCAGCTCGGCAGCGGCACCGGGCAGGCGTGGT
TCGCCTACACCGTGGCGGTGCTGTCCATGGCGTCGCTGGTGCCGCTTCTCCAGGGCGAGA
GCGCCGAGGGCAGAGCCGGCACCATCATGAACGCCAACGCGGAGCTCTGGAATGGCCGTT
TCGCCATGCTCGGACTCGTCGCTCTGGCGGCCACGGAGATCATCACGGGCGCCCCCTTCA
TCAACGTGTAGAATAAACTAGCTTTCTTGCCGACACGATAACACAACTTGTACTTATCTA
GTAGGACATCTGGACATGTAAATGATGATAACTGATCATCCTCTTATTGTAGTACGTATG
TAGTATTGCTAATTAAAGACGGGTATCTTTCTTTTTTCTCAAAAAAAAAAAAAAA

Homology of Contig U35_15417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g55600.1	168	4e-53
Arabidopsis v10	None