barSeed - Barley Seed Development Database

Probe CUST_9940_PI390587928

Source Contig U35_15438

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9940_PI390587928	Hv_44K_v2	TTGATGTTGTTTTGGTTGTGCTCTTTTGGGGCTGGTTTTGGTCTGAGATCAGTCTGTGAG	787	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364590	3202	2e-24	3089 - 3148	100	60 / 60	plus	ABC02680 ABC02681 ABC02683 ABC03319 ABC22151 ABC38726
MLOC	MLOC_60773.1	2988	2e-24	106 - 165	100	60 / 60	minus	ABC03319 ABC38726
JLOC1	JLOC1_39658.1	1853	8e-25	912 - 971	100	60 / 60	plus
Harvest35	U35_15438	913	3e-25	788 - 847	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_15438 913 Hv_44K_v2
GGCTGCAGGAATTCGGTCACGAGGCCCACACACACACCCACACCCACTCTTCTTCCCCCA
ACCGTCTCGGATCGGAGCAGAGCAGAGGCTCTCCCTTGGCCTTCCTCCCTCTCGGCAGCA
GGCTCGACCTTTGCATGGCAGCAGTGGCTACCTCCAAGGGGCGGGTGATCGCTGGGAGCC
TCGTCGCGCGCGTCCTTGCCGGCAAGGCCGCCAACGCCTCCCCGAGGAGGGCGGTGCACG
CGTCGGCCTACGACAAGAACGTGGACGAGCAGGTGCGCCCGGCCTTCGTGCCGGACGATG
TGATCGGCGGCGCCGGGAGCCCAGACAAGTACTGGGGCCCTCACCCGACCACCGGCGTCT
TCGGCCCGGCCGCGGTCGACCCCAAGCTGTCCGCCAGCCTCGCGGCGCCGGCCAGCGCCG
CGAATGGTGGCGGCGCCTCCGTGCTGGACCAGAAGGTGTGGTTCCGCCCGCTCGAGGACG
TCGAGAAGCCCCCCGTCGCCTGATCGCCGCCGGCGACCACAGCCCAGCTCGACATCTCTA
TCACTCTCCTTAGCTGGGCTCGACCACCTACTTAACTATTATCTCTAGTAGCGTGCTTGT
GCTATAGTACAGTCATGGAAGGCACCAGAAGAAGAACCGGTAGTAGTGACGCGGTGTTGC
TGCCTGGAATAAGAACCTGTGAAAGATGTGTGATGATGATGACAGTGATGTGCTCCCGTC
GAAAACCAGTATTATTACAAGTGTTTGGTAAAAAAAAAAAAAAAAAAGCGTCTCTTGATC
TTGCAAATTGATGTTGTTTTGGTTGTGCTCTTTTGGGGCTGGTTTTGGTCTGAGATCAGT
CTGTGAGGCATTCAGTGTCGACAGGAACTTGAAAACCGTCTGACCAACTTGCATTTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_15438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g20320.1	122	4e-52
Arabidopsis v10	None