barSeed - Barley Seed Development Database

Probe CUST_8884_PI390587928

Source Contig U35_17679

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8884_PI390587928	Hv_44K_v2	TTCTGCACAATACTGAAGTTTTGAACAGTGGTAGCCTGTAACAAACCTATAAAGCCCAAA	386	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62357.1	331	7e-23	133 - 189	100	57 / 57	minus	ABC07976 ABC08667 ABC08668
MLOC	MLOC_29321.1	208	7e-23	103 - 159	100	57 / 57	minus	ABC08668
MLOC	MLOC_26261.1	247	7e-23	67 - 123	100	57 / 57	plus	ABC07976 ABC08667 ABC08668
MLOC	MLOC_25233.1	1671	7e-23	48 - 104	100	57 / 57	plus	ABC08667 ABC08668
MLOC	MLOC_9262.1	238	7e-23	38 - 94	100	57 / 57	plus	ABC08668
MLOC	MLOC_30319.1	203	3e-22	126 - 181	100	56 / 56	plus	ABC07976 ABC08667 ABC08668
MLOC	AK356234	1797	3e-21	1665 - 1721	98	56 / 57	plus	ABC07975 ABC07976 ABC08667 ABC08668
JLOC1	JLOC1_17275.1	836	4e-23	51 - 107	100	57 / 57	plus
JLOC1	JLOC1_6066.1	201	4e-23	38 - 94	100	57 / 57	plus
Harvest21	ABC07976	460	3e-25	387 - 446	100	60 / 60	plus	ABC07976
Harvest21	ABC51219	610	1e-23	459 - 515	100	57 / 57	plus
Harvest21	ABC08668	1020	6e-22	870 - 926	98	56 / 57	plus	ABC08668
Harvest35	U35_17679	460	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_49483	610	1e-23	459 - 515	100	57 / 57	plus
Harvest35	U35_3878	1020	6e-22	870 - 926	98	56 / 57	plus

Contig Sequence (460 bp)

>U35_17679 460 Hv_44K_v2
GCACGAGGGGGACTCAGAAACAAATATGAAGTAGCAAACGCCGGGACATGATCTTGCGGA
AGATGGGCAACCATGCTTTGCTGCCAAAAGTCTCCTTCACACAGTGCCGCCGGCAAACAT
GTCATGCAGCATTTGTCGATCAAACATGTGTTAGATGATGGAAAAGATCACACATGGCAT
TTGATTTCAAGTAATGATATTAGAAGTTTCACGGTGATGACCAGATCTTGAGGTTCCACG
GTGATGATGGAAAGATTCCACGGTGATGACCAGATCTTGAGGTTCTATGCTGCGTCGCAG
AGGCTGGTTCTTGAAGTTTCTTGATTTCACCACAATTTTAGCAGTTTTGTGTACCAGCTC
TTTCAGCTTATTTGTAGCATGTGTGCTTCTGCACAATACTGAAGTTTTGAACAGTGGTAG
CCTGTAACAAACCTATAAAGCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None