barSeed - Barley Seed Development Database

Probe CUST_8575_PI390587928

Source Contig U35_50762

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8575_PI390587928	Hv_44K_v2	GGTTGGCTTGATTTGTTGTTGGGAATTGTCTGTAATAGTTCATGGTTTTTGGTATGTATT	72	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54382.2	3421	3e-21	3261 - 3320	97	58 / 60	plus	ABC01389 ABC01390 ABC01391 ABC01394 ABC01397 ABC32893 ABC33336
JLOC1	JLOC1_35000.3	1801	2e-21	1607 - 1666	97	58 / 60	plus
JLOC1	JLOC1_35000.2	1592	2e-21	1398 - 1457	97	58 / 60	plus
JLOC1	JLOC1_35000.1	1619	2e-21	1425 - 1484	97	58 / 60	plus
Harvest21	ABC01390	1708	6e-22	1542 - 1601	97	58 / 60	plus	ABC01390
Harvest35	U35_50762	755	3e-25	73 - 132	100	60 / 60	minus
Harvest35	U35_49554	500	1e-23	361 - 420	98	59 / 60	plus
Harvest35	U35_14172	1672	6e-22	1533 - 1592	97	58 / 60	plus

Contig Sequence (755 bp)

>U35_50762 755 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAAATCCATAATTTACCCCTGTTTCTCCCCTCAGAGCAATA
ATAAAATATAAAAATACATACCAAAAACCATGAACTATTACAGACAATTCCCAACAACAA
ATCAAGCCAACCCAAGTTTGACAACTGATCCCACAAACACACTGACAATGCACAAACATA
AATAGGGTACTTGCACTTGCACCATGGAGCCCCCACGTATATAGGGGGCGTATCCCAAAA
GTACCCACATCACGTCGGGAAAAAAACATAGCTTGCAAATACCCAATACTTTTCTAAAAA
AATGAACCAAACATAACCGAAAACTAAATGATAACAGCAGGGGAGCGCTCGGGGAAATCA
AAACCACTTCCTGGGGACAATCGCTGGGCCAAACTCGTCGAACTCATCCTGGGATATCCA
CATCTGTTGAAAAGGGCTGAGTGAGGCTAGGATGGACCCTCCAATCCAAACACTGTACTT
CCTCTCAGGGGGAGCGACAACCTTGATCTTCATGCTGCTCGGAGCAAGGGCGGGGATCTC
CTTGCTCATACGGTCAGCGATACCTGGGAACATAGTTGTGCCACCACTGAGCACAATGTT
TCCATACAAGTCCTTCCTGATATCCACGTCACACTTCATGATGGAGTTGTAGGTCGTCTC
GGGGATTCCAAAAAACTCCATGCCGATCATGGATGGCTGGAAAAGGACCTCAGGGCACCT
GAACCTCTCTGCGCCAATCGGGATCACCTGACCAT

Homology of Contig U35_50762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01600.1	378	1e-75	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi2g39590.1	378	5e-76
Arabidopsis v10	AT5G09810.1	377	3e-73	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377