barSeed - Barley Seed Development Database

Probe CUST_8050_PI390587928

Source Contig U35_15257

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8050_PI390587928	Hv_44K_v2	TTGGATGTGTTTCTACCTCTTGGGTCTGTGTATTCCTTGAATCTGCTTATTTATACAATT	892	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57640.2	1071	3e-22	1002 - 1060	98	59 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
MLOC	MLOC_57640.1	1968	3e-22	1896 - 1954	98	59 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862 ABC36918
MLOC	MLOC_57641.2	3588	3e-22	3516 - 3574	98	59 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
JLOC1	JLOC1_37384.1	1168	1e-22	1095 - 1153	98	59 / 60	plus
Harvest21	ABC03165	955	3e-25	893 - 952	100	60 / 60	plus	ABC03165
Harvest35	U35_15257	955	3e-25	893 - 952	100	60 / 60	plus

Contig Sequence (955 bp)

>U35_15257 955 Hv_44K_v2
GGCCGGAGGGGAGGGGGGAGGGAGATGGCGTACAGGGCGGAGGACGACTACGACTACCTG
TTCAAGGTGGTGCTGATCGGGGACTCCGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTC
ACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGC
AGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAG
AGGTACCGGGCGATCACGAGCGCGTACTACCGCGGGGCGGTCGGCGCCCTGGTCGTCTAC
GACGTCACGAGGCACGTCACATTCGAGAACGTCGAGAGGTGGCTGAGGGAGCTCAAGGAC
CACACGGACGCCAACATCGTGATCATGCTCGTGGGGAACAAGGCGGACCTGCGCCACCTC
AGGGCCGTCCCTTCCGAGGACGCCAAGGCGTTCGCCGAGAGGGAGAACACCTTCTTCATG
GAGACGTCCGCCCTGGAGGCCATGAACGTCGAGGACGCCTTCACCGAGGTGCTCTCCCAG
ATCTACCACGTGGTGAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGCCTCCC
AAGGGCAAGACCATCAGCGTCGGCTCCAAGGACGACGTGTCCGCGGTGAAGAAATCCACC
TGCTGCTCGTCTTAGCTTAAGCTCAGGATGGTGGCATCTTATACAGTAGGGGGGAGGGCA
CTATGTTATTGCAGTCATAGTCCTCATTTGTATTCATGCGCTATCGAGTGTCTCAATGTT
CATTTTGCCATATTTTTCATACATTTGATTCGTTCACGACTACAGCTTTTGCTGGTATAG
TTTAGGGGTTTGGAAGTGTGAGGTTATCGTGAATTTCTTATAGGCCTTTTCCTTGGATGT
GTTTCTACCTCTTGGGTCTGTGTATTCCTTGAATCTGCTTATTTATACAATTCCA

Homology of Contig U35_15257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48980.1	218	3e-143	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g16480.1	217	4e-148
Arabidopsis v10	AT5G60860.1	217	4e-137	\| Symbols: AtRABA1f, RABA1f \| RAB GTPase homolog A1F \| chr5:24484750-24485565 FORWARD LENGTH=217