barSeed - Barley Seed Development Database

Probe CUST_8049_PI390587928

Source Contig U35_15258

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8049_PI390587928	Hv_44K_v2	AGCCCTCAGAGATTATACTGTATCTTCTGTATCACAATAGGTTATGTCTACTTGGTAAAT	1033	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371399	1396	2e-24	1223 - 1282	100	60 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862
MLOC	MLOC_76794.1	1181	2e-24	989 - 1048	100	60 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03169 ABC03170 ABC21862
JLOC1	JLOC1_51214.2	950	8e-25	685 - 744	100	60 / 60	plus
JLOC1	JLOC1_51214.1	1254	8e-25	989 - 1048	100	60 / 60	plus
Harvest21	ABC14175	1181	3e-25	1113 - 1172	100	60 / 60	plus
Harvest35	U35_15258	1102	3e-25	1034 - 1093	100	60 / 60	plus

Contig Sequence (1102 bp)

>U35_15258 1102 Hv_44K_v2
GGCTGTCGTCGGGTCGGGTCGGCCATGGCCTACAGGGCGGAGGACGACTACGACTACCTC
TTCAAGGTCGTGCTCATCGGCGACTCCGGGGTCGGCAAGTCCAACCTCCTCTCCCGCTTC
ACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAGG
AGCATCAGGGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACGGCAGGACAGGAG
AGGTATCGGGCAATTACAAGTGCATACTATCGAGGGGCCGTTGGTGCACTTGTCGTGTAC
GATGTGACACGCCATGTGACCTTTGAGAATGTGGAGAGGTGGTTGAAGGAGCTCCGGGAT
CACACAGATGCAAACATTGTCATCATGCTTGTCGGCAACAAAGCTGATCTACGCCACCTT
AGGGCTGTATCAGTGGAGGATGCCAAGGCCTTTGCTGAGAGGGAAAGCACCTTCTTTATG
GAAACATCTGCGTTGGAGGCCATGAACGTTGAAAACGCCTTCACTGAGGTTCTGACTCAG
ATCTATCGCGTGGTCAGCAAGAAGGCCCTCGACATAGGCGATGACCCTGCTGCTCCACCG
AGAGGACAAACCATCAACGTTGGTGGCAAGGATGATGTCTCTGCTGTGAAAAAGGCAGGC
TGCTGTTCATCCTAAATTCGTTTTGCTTGTGAAGAGGGATCATATGCTCACCTGATTATA
TGGGTAACTGCAAATATGACATCCTTTTTCCCTCCTAACCTGGTTGTTTGCGAGAATATA
CTGGTGCACCAAGAATTTCGTTTAGATATCAAGATTTAACCCCAGGTTGATAATGGGGGA
CATGCTAACCTTTGGAATGTCAGTGATTTTGTGGTTACCTTTTATGGTTTCTTAGCTGCT
GTATTGTCCCACCTCAATTGACACAAGAATCTTCTCAACATTTCACTGTGCAGCCTAACC
TGATAAAGGTTGTAATGGGAGCTATGGTTCATTACTTCTCTTGGCTTTCCTGCTGAATGG
ATGTGTACTATGTAGCCCTCAGAGATTATACTGTATCTTCTGTATCACAATAGGTTATGT
CTACTTGGTAAATGTCATCTGT

Homology of Contig U35_15258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g15790.1	217	5e-147	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi4g28130.1	217	7e-149
Arabidopsis v10	AT5G60860.1	217	3e-139	\| Symbols: AtRABA1f, RABA1f \| RAB GTPase homolog A1F \| chr5:24484750-24485565 FORWARD LENGTH=217