barSeed - Barley Seed Development Database

Probe CUST_7486_PI390587928

Source Contig U35_8990

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7486_PI390587928	Hv_44K_v2	TGCTTTAGCACTTCTCTGCATATCACGATGGAGTGCGATAACGGGCACGTCGCCGCCAAC	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248841.1	2565	2e-24	131 - 190	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
MLOC	MLOC_78657.1	655	2e-24	117 - 176	100	60 / 60	minus	None
JLOC1	JLOC1_52424.1	541	8e-25	117 - 176	100	60 / 60	minus
Harvest21	ABC29497	243	3e-25	93 - 152	100	60 / 60	plus
Harvest35	U35_8990	644	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_8990 644 Hv_44K_v2
AAACGAAAGTTAGGATGGAATCGTGCACTCGAGTTGGCGTCAGGCTCCTCATGAAAAGGC
CCAGCGTGGCAGCGTCGTCTCTTCCCCCGTCCACGCCGGATAGCCCTCTGCCACCAACCC
CCGTCCTGCTCGAGGGACGCGCATCAACCAGTTCCACTCGCAGCTTTGCCCACGTCGACT
GAGTCCAGTTGCCACGAAGCAGCCACCCGCTCCGTGCCGTGCGCTCCCGTGGCGACCGGA
GCTCCGCACCCACCAATGCAGTGGTCAACCTCGCCGTCGAGTTCTACACCAACCCACTGT
CGCACCTACCTCCTCAGCTGCGCCTGCGCTGCCTATTTAATCCATCCACTCCCTCCATCC
CCCTCCAAGAAGAGCCATAGCTTAATCTGCAGCTACAGCTCCTCTTCAGCACAGCCCCTT
CTGTTTCTGCAGGACACAGATCAATCCAGAATTCCAGATACGCATACACCTGCCGGCGTC
TAGCTAGCTCACTTGCTTTAGCACTTCTCTGCATATCACGATGGAGTGCGATAACGGGCA
CGTCGCCGCCAACGGCGATGGCTTGTGCGTGGAGCAGCCGGCGCGGGCCGACCCACTGAA
CTGGGGGAAGGCGGCCGAAGAGCTCTCGGGGAGCCATTTGGATG

Homology of Contig U35_8990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None