barSeed - Barley Seed Development Database

Probe ABC01795

Source Contig ABC01795

barSeed

Links

Affymetrix Source Sequence (1812 bp)

>ABC01795 1812
CCAAGGTTAATGCCGCCGAGGCATTTAAGATTGCGGGCATCCAACACGGCTTCTTCGAGC
TGCAACCGAAGGAAGGCCTTGCTATGGTTAATGGTACGGCGGTGGGCTCTGGACTCGCGT
CCATTGTTCTCTTTGAAGCCAATGTCCTTGGTGTGCTTGCTGAAGTTTTGTCGGCCGTGT
TCTGCGAAGTGATGAACGGCAAGCCAGAATACACCGACCACCTGACACACAAGTTGAAGC
ATCACCCGGGGCAGATCGAGGCCGCGGCCATCATGGAGCACATCCTAGAGGGCAGCTCCT
ACATGATGCTCGCGAAGAAACTTGGTGAGCTCGACCCATTGATGAAGCCGAAGCAAGACA
GATATGCTCTTCGCACATCGCCGCAATGGCTTGGGCCACAAATTGAGGTCATCCGTGCAG
CGACGAAGTCGATCGAGCGCGAGATCAACTCTGTCAATGACAACCCACTCATTGACGTGT
CTCGTGGGAAGGCAATCCATGGTGGCAACTTTCAGGGCACGCCCATCGGTGTGTCCATGG
ACAACACGAGGCTTGCCATTGCTGCAATTGGCAAGCTCATGTTTGCCCAATTCTCGGAGC
TAGTGAACGACTTCTACAACAATGGCTTGCCCTCCAACCTCTCTGGTAGTCGCAACCCAA
GCCTGGACTATGGCTTCAAGGGTGCCGAGATCGCCATGGCATCATACTGCTCGGAGCTTC
AATTCTTGGGCAACCCTGTGACCAACCACGTCCAGAGTGCGGAGCAACACAACCAAGACG
TTAACTCCCTTGGATTAATCTCGGCCCGGAAGACCGCTGAGGCCATCGACATTCTAAAGC
TCATGTCCTCTACGTTTTTGGTTGCGCTCTGCCAAGCCATCGACCTGCGCCACCTCGAGG
AGAATGTCAAGAACGCAGTCAAAAGTTGTGTCACAAGAGTGGCTAGGAAGACCCTAATCA
CAAATGACATGGGTGGCCTCCACAACGCTCGTTTTTGTGAGAAGGACCTGCTCCAGACAA
TCGACCGCGAGGCAGTGTTTGCGTATGCAGACGACCCTTGCAGCGCCAACTACCCTCTCA
TGAAGAAGATGCGTGCGGTGCTGGTGGAGCACGCCTTGGCCAACGGCGAGGCTGAGCGCA
ATGTGGAAACCTCGGTGTTTGCCAAGGTTGCCAAATTCGAGCAGGAGCTATGTGCTACAC
TACCTCAGGAGGTTGAGGCTGCTAGAGGTGCAGTGGAGAATGGCACCGCCGCAGAACCAA
ACCGTATCGTAGACTGCCGGTCATACCCTCTGTACCGGTTTGTGCGCGAGGAGCTGGGCA
CGGTGTACTTGACCGGAGAGAAGACACGGTCACCCGGGGAGGAGGTGGACAAGGTGTTTG
TTGCTATGAACCAGGGTAAGCACATCGACGCGCTGCTGGAATGCCTCAAGGAATGGAACG
GCGAGCCCCTGCCTCTCTGCTAAATGCTAATCAAGGAGATGAAGAGAAGATGCTGTGCTT
GAGAATTCTGAGGGCTCCACTTGTTCTAAACTGATAAGGGATACTACTGTTGTTTGATTT
CTTTCTTTCTTTTCCCCCTCTTCTAAATCGTTCTTCCGGAGCTAGAGGCCATTCCATATA
AAGATTGCACTCTTGAATACTTGTAGCGCAGCAACTAGAGCTTCTGCCCAATGTAAGCAA
AAGGGCACATATTTTCATGTCAAATGTTGCTTCTACTACTGAATCAGCACGTTCAGACTT
ACTGTATCTGGTTATCACGTCACATTGCAATATATATAGAGAGAAATAGCACCATAAAAA
AAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK361880	2575	0.0	831 - 2575	99	1740 / 1745	CUST_2698_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01805
AK252969.1	1534	0.0	1 - 1357	97	1321 / 1364	CUST_2679_PI390587928 CUST_230_PI415269222	ABC01795 ABC01799 ABC01802 ABC01805
MLOC_477.3	4582	0.0	895 - 2425	92	1414 / 1538	CUST_2702_PI390587928 CUST_232_PI415269222	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
AK371460	2570	0.0	836 - 2298	92	1350 / 1463	None	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
AK248841.1	2565	0.0	839 - 2297	84	1235 / 1463	CUST_7486_PI390587928 CUST_2680_PI390587928 CUST_10881_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
MLOC_62322.1	2157	0.0	237 - 1784	83	1298 / 1559	CUST_2677_PI390587928 CUST_10881_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
AK250100.1	2586	0.0	852 - 2399	83	1297 / 1559	CUST_10881_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
AK353809	2535	0.0	806 - 2353	83	1297 / 1559	CUST_10881_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
AK250690.1	2553	0.0	823 - 2370	83	1297 / 1559	CUST_10881_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
AK357761	2712	0.0	861 - 2319	84	1225 / 1461	CUST_229_PI415269222 CUST_228_PI415269222 CUST_2681_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC_79728.2	2135	0.0	408 - 1866	84	1225 / 1461	CUST_228_PI415269222 CUST_2681_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC_79728.1	2138	0.0	319 - 1777	84	1225 / 1461	CUST_228_PI415269222 CUST_2681_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC_67169.1	717	0.0	1 - 702	99	698 / 702	None	ABC01795 ABC01802
MLOC_34571.1	1291	0.0	1 - 779	91	712 / 779	None	ABC01795 ABC01797 ABC01799 ABC01802
MLOC_28752.1	546	0.0	1 - 546	99	545 / 546	None	ABC01795 ABC01799 ABC01805
MLOC_56386.1	1437	0.0	1 - 928	84	785 / 932	CUST_2680_PI390587928 CUST_10881_PI390587928	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01805
MLOC_40389.1	893	0.0	269 - 893	93	579 / 625	None	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC_19798.1	1812	0.0	1 - 497	95	472 / 497	None	ABC01795 ABC01797 ABC01799 ABC01800
MLOC_34571.2	1316	0.0	1 - 476	91	434 / 476	None	ABC01795 ABC01802
MLOC_477.1	1540	4e-180	1046 - 1540	90	451 / 502	CUST_232_PI415269222	ABC01795 ABC01802
MLOC_42382.1	549	1e-149	262 - 549	100	288 / 288	None	ABC01795 ABC01800
MLOC_6761.1	383	2e-79	162 - 383	91	208 / 229	CUST_2679_PI390587928 CUST_230_PI415269222	ABC01795 ABC01802
MLOC_6759.2	3894	5e-79	3674 - 3894	91	207 / 228	CUST_2679_PI390587928 CUST_230_PI415269222	ABC01795 ABC01802 ABC08969
MLOC_477.2	1167	3e-71	950 - 1167	89	201 / 225	CUST_232_PI415269222	ABC01795