barSeed - Barley Seed Development Database

Probe CUST_7195_PI390587928

Source Contig U35_2372

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7195_PI390587928	Hv_44K_v2	GCATTTATGCTCTTTGCTGAACAGCAACATGCTTTTGCTTGTCCTCTGTTTTCTCCCAAA	759	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355597	2680	3e-21	1257 - 1310	100	54 / 54	plus	ABC06221 ABC08253 ABC18413 ABC44679 ABC48970
Harvest21	ABC22303	547	6e-22	133 - 186	100	54 / 54	plus
Harvest35	U35_2372	832	3e-25	760 - 819	100	60 / 60	plus
Harvest35	U35_2371	1690	6e-22	1229 - 1282	100	54 / 54	plus

Contig Sequence (832 bp)

>U35_2372 832 Hv_44K_v2
GCGAGCCGAGCGACATCGTCGGGCAGGCGACGCGAACCAAAGACACAAAACAAGCGAAGC
GAACCCCCTCTTCCTCCTCATGTCGCCATCCGCAGCCACCGGCAAAACCTCGTCCAGGGA
GCCATGGAGAGCAGCACCAGCGCCGAGGAGTCGCGGTGACTCGCGGCCCTCTGTGAACCC
GAGCTCGATTTGCTCATCAGCCTGAAGATGCTGGCGTGTCACCCGCTGTCACCCGCTGAT
TACTCTCCAAATGCAAAGTTCATTTCCGTCCTATCACCCGCTGATTACTCACCCGCTGTC
ACCTGCAGGATGGTTTCTTGATTTATTTCCGTCCTGTCACCCGCTGATTACTCTGCAAAT
GCAAAGTTCATTTCCGCTTTGGTGGCAGACCTATTGTCTTTGTTACTGATTTATGTGCAC
TTACGCCATGCCTTGGGACATTCAGTTGTTTCTGTTATTCTTCAAATACTCTGAATCTGT
GTGTCAAGGGGGGCAAATTTGGAGCAAAACTTTGAATTCATGGTAAGCATAGGACGGTTT
CCCTGATTCAGAGTTGTGGCATATAATGGTCTTCACACAAATGCAGCTTATAATCATATA
TATATATATATATATATATATATATATTATGCACCCGGGTGTCATGCCTTATGACCCTTT
CTTAATAGCTAATCAGTCTTTAGGCTGGTTTCACACGAAAATACGATTTGTACTTCTTAC
TTTATTTGCTAGTGTTTGAAAGATGTTTGCTCTTCACTTGCATTTATGCTCTTTGCTGAA
CAGCAACATGCTTTTGCTTGTCCTCTGTTTTCTCCCAAAAAAAAAAAAAAAA

Homology of Contig U35_2372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None