barSeed - Barley Seed Development Database

Probe CUST_6320_PI390587928

Source Contig U35_21407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6320_PI390587928	Hv_44K_v2	CCTGCCATGTCTCTTCTCATGTAATCTCATGGTTGTAGATCACATTCTTTATTACATAGG	1124	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358722	1269	2e-24	1055 - 1114	100	60 / 60	plus	ABC15196 ABC17921
MLOC	AK368562	1246	2e-24	1149 - 1208	100	60 / 60	plus	ABC15196 ABC17921
MLOC	MLOC_66195.1	5505	2e-24	319 - 378	100	60 / 60	plus	ABC15196 ABC20409 ABC22174 ABC38352
MLOC	MLOC_66194.1	2442	2e-24	237 - 296	100	60 / 60	plus	ABC15196 ABC20409 ABC22174 ABC38352
JLOC1	JLOC1_43597.1	4251	8e-25	4105 - 4164	100	60 / 60	plus
Harvest21	ABC15196	1215	3e-25	1125 - 1184	100	60 / 60	plus	ABC15196
Harvest35	U35_21407	1215	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1215 bp)

>U35_21407 1215 Hv_44K_v2
TGGGTACCCGGGCCCCTCCTCGTGCCGCTGACTCCTACTACCAGCTTCCCACTCCCACTC
CCGCAGCGGGTGATCCATGGCCACGGCTTTCCGCCTCCCGCCTCTCCTCTCCTCGCGCGC
CGCCCCTACCACCGCCGCCCGCGCTACCACCTGGAGGAATCGGACAGGATCGTTCACTCA
CAGGGTCGCCGCGCAGCCTGACGACACTACCGCCACCACCTCCACCAGCACCACGCCGGC
GCCGCCTACCGGGTTCACGCCTCCGGTTCCCAAGCGGTTCGAGGTCAAGCCCGGCCAGTC
AAACAACATCGCCGGCGCCGCTCTCGCCTTGCCCTTCCGCCTCGGCACCGGCGTCTTCGT
CCTAGGATATGGAGTGACACTTCTTGACGCTAACGAGATATCACCAGATCAGTATGCTTT
GGATTTCCAAGGTCGGAAGGTGAAAGAAACGTCGAAGGTGGGGCAGTGCCCTCGACCTGC
TAAGCCTATTGAAATATACGAGTTTGAAGGATGCCCATTTTGTCGAAAGGTCAGAGAGAT
GGTATCCGTCCTGGACCTTGATGTGTTATATTACCCTTGTCCTAAAGGCGGCCCAACCTT
CCGTCCAAAGGTTCTAGAGATGGGCGGGAAGAAACAGTTTCCTTACATGGTGGATCCAAA
CACAGGAGTCGCTATGTATGAATCAGATGACATCATAAATTACCTGGCAAAAACTTACGG
TGATGGAAGCGTTCCGACTATGCTAAAACTTGGTCTATTGACAACAATAACGGCAGGGCT
TGCATTGAGTGGGCGTAGCGGGAAGGGATCTTCCTACAGTCCTGCAAAGCTTCCATCCCA
GCCAATAGAGATATGGGCATACGAGGGATCTCCTTTTTGTAAAATAGCCCGTGAGACCCT
TGTCGAATTGGAGTTGCCACACTTGCTACACAGCTGTGCGCGTGGCAGTCCCAAGCGACA
GGATTTTTTCAAGAAATATGGTCTTTTTCAGGCGCCTTATATCGAGGATCCTAACACGGG
GGTGAAGATGTTCGAGAGCGCCGACATCGTAGAGTATTTGAGGGCAACATATGCTGCTTG
AGAATCACTGACACTTTCTTTCTCAGTAACATTTGAGCTCATAGCCTGCCATGTCTCTTC
TCATGTAATCTCATGGTTGTAGATCACATTCTTTATTACATAGGAAAAATGATGAATCCT
CGATTATGTGAGGTG

Homology of Contig U35_21407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44400.1	342	2e-157	protein\|glutathione S-transferase, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g42820.1	335	2e-172
Arabidopsis v10	AT5G03880.1	339	4e-124	Thioredoxin family protein \| chr5:1038674-1041453 REVERSE LENGTH=339