barSeed - Barley Seed Development Database

Probe ABC17921

Source Contig ABC17921

barSeed

Links

Affymetrix Source Sequence (796 bp)

>ABC17921 796
GCTGGACCTTGATGTTTTATTTTACCCTTGTCCTCAAAAGGGGCCAACATTTCGTCCAAA
GGTTTTAGAGATGGGAGGGAAGACACGGTTTCCTTACATGGTGGATCCAAACACAGGAGT
TGCCATGTATGAATCAGATGAGATCATAAAATACCTTGCGGACACATACGGCGATGGAAG
TGTTCCAATTATGCTATCGCTTGGTCTATTAACGACAATAACAGCAGGGCTTGCTATGAT
TTGGCGTGTACGGAAGGGATCTTACTACACTGTTTCAAAGCTTCCACCCCAGCCAATAGA
GATCTGGGCATACGAGGGATCCCCTTTCTGTAAAATAGCACGAGAGGCCCTTGTTGAATT
GGAGTTGCCACACTTGCTACACAGTTGTGCTCGTGGCAGCCCCAAGCGACAGGAAATTTT
CAAGAAACATGGCATTTTCCAGGCGCCTTATATCGAGGATCCTAACACGGGGGTCAAGAT
GTTCGAAAGCGCTGAGATCGTTGAGTACCTGAGGGCAACATATTCACTCTATCCTCAGTA
CCAAAATCTCTGAAGCGTTGATATATAGTATGGATTTAGAATATATCCTTTACAATTAAC
AGCGGAGTCCCAAATGTAATGTAGAAGTTGTATTCAGTTGTCACCCTTTGAGATTTTTTA
TGGTGGTGCGGAACCATGTGGTGATGAAATTTTGTAGCATGGAAAACATGTTGGATTTGT
GATGCAAAGGAAGACATATGTAATGTGTGGAATTATACATAAGCAAATAAGGTAGTAGAA
GATAGATTTTTTTTTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_12061.2	1365	0.0	1 - 780	100	780 / 780	CUST_12262_PI390587928	ABC15196 ABC17921
MLOC_12061.1	1184	2e-84	720 - 889	100	170 / 170	CUST_12262_PI390587928	ABC15196 ABC17921
MLOC_12061.3	1342	2e-84	637 - 806	100	170 / 170	None	ABC15196 ABC17921
MLOC_12061.4	466	0.0	1 - 345	100	345 / 345	None	ABC15196 ABC17921
AK368562	1246	1e-166	575 - 1096	87	455 / 523	CUST_6320_PI390587928	ABC15196 ABC17921
AK358722	1269	6e-165	481 - 1002	87	454 / 523	CUST_6320_PI390587928	ABC15196 ABC17921
MLOC_2275.3	3301	1e-81	2844 - 3128	86	247 / 287	None	ABC15196 ABC17921
MLOC_2275.1	3439	1e-81	3024 - 3308	86	247 / 287	None	ABC15196 ABC17921
MLOC_2275.2	3206	1e-57	2845 - 3056	86	184 / 214	None	ABC15196 ABC17921
MLOC_2275.4	3569	1e-57	3019 - 3230	86	184 / 214	None	ABC15196 ABC17921