barSeed - Barley Seed Development Database

Probe CUST_6150_PI390587928

Source Contig U35_23544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6150_PI390587928	Hv_44K_v2	TGAAGGAGAAGCTCTCCTACATCGCCCTCGACTACGACCAGGAGATGGAGACCTCCAAGA	49	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7384.1	1603	2e-24	768 - 827	100	60 / 60	plus	ABC01389 ABC01390 ABC01391 ABC01393 ABC01397
JLOC1	JLOC1_4866.1	1767	8e-25	777 - 836	100	60 / 60	plus
Harvest21	ABC21163	264	3e-25	50 - 109	100	60 / 60	plus
Harvest35	U35_23544	264	3e-25	50 - 109	100	60 / 60	plus

Contig Sequence (264 bp)

>U35_23544 264 Hv_44K_v2
CGCGGCTACTCCTTCACCACGACGGCGGAGCGGGAAATCGTGCGCGACATGAAGGAGAAG
CTCTCCTACATCGCCCTCGACTACGACCAGGAGATGGAGACCTCCAAGACCAGCTCCTCC
GGGGAGAAGAGCTACGAGGTGGCCGACGGGCAGGTCATCACCATCGGCGCCGAGCGCTTC
CGGTGGCCCGAGGGGGTCTTCCAGCCATCCTTCATCGGGATGGAAGCCGCCGGGATCCAC
GAGACCACCTACAACTCCATCATG

Homology of Contig U35_23544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None