- Probe CUST_5182_PI390587928
- Source Contig U35_37708
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5182_PI390587928 | Hv_44K_v2 | TGTGGCGTGAAGACATAAACAAACCTTTGGAGCCATAGTTGTCTTTTTGTCATCTAAAAT | 222 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_26582.1 | 394 | 7e-23 | 319 - 378 | 98 | 59 / 60 | plus | ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794 |
| MLOC | AK374635 | 978 | 9e-22 | 825 - 886 | 97 | 60 / 62 | plus | ABC01658 ABC01659 ABC01661 ABC01664 ABC09131 ABC38555 ABC39899 ABC49794 |
| MLOC | MLOC_81662.1 | 306 | 9e-22 | 203 - 264 | 97 | 60 / 62 | minus | ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794 |
| MLOC | MLOC_3897.1 | 244 | 9e-22 | 27 - 88 | 97 | 60 / 62 | plus | ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794 |
| JLOC1 | JLOC1_18056.1 | 391 | 4e-23 | 316 - 375 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_2351.1 | 244 | 5e-22 | 27 - 88 | 97 | 60 / 62 | plus | |
| Harvest21 | ABC01658 | 1412 | 3e-25 | 1131 - 1190 | 100 | 60 / 60 | plus | ABC01658 |
| Harvest21 | ABC49794 | 716 | 2e-22 | 206 - 267 | 97 | 60 / 62 | minus | ABC49794 |
| Harvest21 | ABC39899 | 561 | 2e-22 | 179 - 240 | 97 | 60 / 62 | minus | ABC39899 |
| Harvest21 | ABC01661 | 793 | 8e-21 | 509 - 570 | 95 | 59 / 62 | plus | ABC01661 |
| Harvest35 | U35_37708 | 690 | 3e-25 | 223 - 282 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14989 | 1377 | 3e-25 | 1131 - 1190 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14990 | 755 | 2e-22 | 516 - 577 | 97 | 60 / 62 | plus |
Contig Sequence (690 bp)
>U35_37708 690 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACAAATTTCATGATCCATATATCAAAACTCCATAGCATCCAT ACATCCAAAATTCCATAACATCCATATATACCATATAGTTCCATAGCATCCATACATACA TAGCTCCATAACAAATATAGTTCCATAGCATCCATTCATTATTCACATACAATTTTTTGA GCTAGAATATTATTTTGTTTGTATTAATATGTTACCATTATTATTTTAGATGACAAAAAG ACAACTATGGCTCCAAAGGTTTGTTTATGTCTTCACGCCACATAAGTAAACGAAGTAGAA GGGGCGCATGTTTAGGAGCTCAAGCGCGCTGTCCTTTTGAACTGTGAGCAACAGCATGAA TGAGCCTTCAGGCTGCGCGAGGAAGGAGACCGTCTTGGCAACCTTCTCCAAGAACTGCTG ACTCTGCACCAGCAACGAATCGCCATTCCTCTCCACAATTCAGTCAAACCTGTAAATTCT ACTCGGGAGCTAAGCAAATGAAAGGGTTATAGGTTATTTCTAGAGCAGAGCTATTTGAGA AGATGGTCCAAAGTGGTCATGAACAAAATTTACACACGAAATGACAATGAAACAAAGGCA TTTAGCCAGCTTTGCAAATCTACATGAAAAAGTTATGTAAATTTGATTTGCTTGCGGCAC ACACATTAGTAGGAATAGAACTAGCAAATT
Homology of Contig U35_37708 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |