barSeed - Barley Seed Development Database

Probe CUST_490_PI415269222

Source Contig TA30385_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_490_PI415269222	Hv_44K_v2	GCCCCATAATCATTTCCTTGTGTACATTCACTTCTGCGATATGTGATCTTTTGGGTTGCG	1591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13146.4	1639	2e-24	1580 - 1639	100	60 / 60	plus	ABC01390 ABC01394 ABC01397
JLOC1	JLOC1_8866.3	1267	8e-25	1083 - 1142	100	60 / 60	plus
JLOC1	JLOC1_8866.1	1800	8e-25	1616 - 1675	100	60 / 60	plus
Harvest21	ABC47430	530	3e-25	31 - 90	100	60 / 60	minus
Harvest21	ABC01394	1640	3e-25	1564 - 1623	100	60 / 60	plus	ABC01394

Contig Sequence (1651 bp)

>TA30385_4513 1651 Hv_44K_v2
AAAGCCTAACACTTGGTTCTCCTGCCTCTGCCTAGTTCGCCGCCACCGCCGCCACCCACC
CCCTCATCCTCTTCGTCCGCTCTTTGCAGTGTCCGCTCATCTCGGCGGGAGGTCCTCAGG
CGGGCAGGTTCCCCTAGATCCCCGGAGTCACTTAATCAAATGGCTGACGGTGAGGACATC
CAGCCCCTTGTCTGCGACAATGGAACTGGCATGGTCAAGGCTGGTTTTGCAGGGGATGAT
GCGCCAAGGGCTGTCTTCCCAAGTATCGTTGGGCGCCCCCGCCACACTGGTGTGATGGTG
GGGATGGGGCAGAAAGATGCATATGTTGGTGACGAGGCCCAATCCAAGAGGGGTATCCTC
ACCTTGAAGTACCCGATCGAGCATGGTATCGTCAGCAACTGGGACGATATGGAGAAGATC
TGGCATCACACTTTCTACAATGAGCTCCGTGTTGCACCTGAGGAGCACCCAGTATTGCTG
ACTGAGGCACCCCTGAACCCCAAGGCTAACAGGGAGAAGATGACACAAATCATGTTTGAG
ACCTTTAATGTTCCAGCCATGTATGTGGCCATCCAGGCAGTGCTTTCCCTATATGCTAGT
GGACGCACAACAGGTATCGTGTTGGATTCTGGTGATGGTGTCAGCCATACTGTGCCAATC
TATGAAGGATATGCCCTTCCACATGCCATCCTTCGTCTTGACCTCGCTGGGCGTGACCTA
ACTGACTGTTTGATGAAGATTCTTACGGAGAGAGGTTACTCCTTCACCACGACTGCCGAA
CGGGAAATTGTAAGGGATATTAAGGAGAAGCTCGCATATGTGGCTCTTGACTATGAACAA
GAGCTGGAAAATGCCAAGAGCAGCTCCTCTGTGGAGAAGAGCTATGAGCTGCCTGATGGG
CAGGTGATCACCATTGGGGCAGAGAGGTTCCGTTGCCCTGAGGTCCTTTTCCAGCCATCT
TTCATTGGTATGGAAGCTGCTGGAATCCATGAGACCACCTACAACTCTATCATGAAGTGT
GATGTGGATATCAGGAAGGACCTGTATGGTAACATTGTGCTCAGTGGTGGGTCAACTATG
TTCCCGGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTTGCACCAAGCAGCATG
AAGATCAAGGTGGTGGCACCGCCTGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCGATT
CTTGCCTCACTTAGTACCTTCCAACAGATGTGGATCTCGAAGGGTGAGTACGATGAGTCA
GGTCCAGCGATTGTCCACCGGAAGTGCTTCTAAGTTGCGAGTTGTCTGGGTCTTCTGAAT
CTATTCTGGCTGTTCTTTTCTCAAGTCCTTGCCATGTAAGCTACTATGTTTGAGATTGCT
GGGATTCTGTTGACTGTATTGCCGGATTAATTTGTTGGATCAAGATTGCGTACCTTGTAG
ACTCGTAATATGTTCAGTGGGCTGCTATATTTGATCGGTGCTGAATCATATGTCGCATGT
TCCTGGGTTTTTTTCATGCCAAAAGGTTTGGTGCTAGCGTGGGGGGAGTGTCAAAATATC
TACCAGTGCTTTGTAAGAGTTTTTTGTGTGAGCCCCATAATCATTTCCTTGTGTACATTC
ACTTCTGCGATATGTGATCTTTTGGGTTGCG

Homology of Contig TA30385_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g06390.4	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi4g41850.1	378
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377