barSeed - Barley Seed Development Database

Probe CUST_4385_PI390587928

Source Contig U35_37686

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4385_PI390587928	Hv_44K_v2	TCTTACTGCATGAGTAACCTTATTCATAGCAATCTTCATTCTTTAGGTGAAAGCAACCTG	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41697.1	1465	2e-24	1369 - 1428	100	60 / 60	plus	ABC11624 ABC11625 ABC16799 ABC33341 ABC37734 ABC44428
JLOC1	JLOC1_27134.2	1459	8e-25	1363 - 1422	100	60 / 60	plus
Harvest21	ABC33341	709	3e-25	582 - 641	100	60 / 60	minus	ABC33341
Harvest35	U35_37686	709	3e-25	582 - 641	100	60 / 60	minus

Contig Sequence (709 bp)

>U35_37686 709 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAAATAGAATATATATTNTCATTTCAGTAGCATATTCAGATC
AAATACATTACATCATCCACCGACTCCACGCATTAAGGTTCAACGCCTAACAAGGGCACA
TCAACATAATTTTACATGTGCACAACAGAATACTTCTACAAGTGCAAGTGCACAGAAAAA
GGACCCAACAAGTGCACAATCGCACAAAAAGAGAGTTCCACAAAGATGGGATGAGAACCA
CAAGTTTCTTCTCATCCTCTTTCTCCGCACAATATGCTCTTGCCATTGCCGTCTGTGCAG
ATAACTTTTGCTTCAACAGCTACAGTACATATGTGAATAGGTTGCGCGAGTAAGCTTCAT
CACACTGTAACAAAACAAAAGGATAAATAATTAAAAAGCCAACAACAATTGATGCCAAGA
AGAGGGTCAATATCCAGCCCTTTGAAATGCAAATAAATCAAACTGGAGGCTAGTACTAAC
CAAGCATTGCTCCGAGCATCATAAGATGAGAAAAAGTAAATTACTTGTGTAGTCAGCTAA
ATAATCAATGTTACTCATGTAGTTGGCTGACGATAGAATACCAGGTTGCTTTCACCTAAA
GAATGAAGATTGCTATGAATAAGGTTACTCATGCAGTAAGAGAACCACACATACTGATCA
AGAAATAGTTGAATTAAATACATGACAATATTAAACCGGTCACGCTAGC

Homology of Contig U35_37686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None