barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_40835_PI390587928Hv_44K_v2AACCATGGAAATAGTTACCGGTTCAGCACCATTGAATAAAGAATTTTGAGCAGTTTTAAC595GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_41698.26672e-24602 - 66110060 / 60plus ABC11624 ABC11625 ABC16799 ABC37734 ABC44428
MLOCMLOC_41697.114652e-24659 - 71810060 / 60plus ABC11624 ABC11625 ABC16799 ABC33341 ABC37734 ABC44428
MLOCMLOC_7434.120703e-21935 - 9949758 / 60minus ABC11624 ABC11625 ABC15764 ABC44428
JLOC1JLOC1_27134.214598e-25653 - 71210060 / 60plus
JLOC1JLOC1_4897.123382e-211037 - 10969758 / 60plus
Harvest21ABC116246734e-24596 - 6559859 / 60plusABC11624
Harvest21ABC1162510545e-23614 - 6729859 / 60plusABC11625
Harvest35U35_192346753e-25596 - 65510060 / 60plus
Harvest35U35_1923512835e-23614 - 6729859 / 60plus



Contig Sequence (675 bp)

>U35_19234 675 Hv_44K_v2
CTCCTCTCTGGTGTCCCGCGTCCTAGTTTAGCCGCCGCCGCCGCTTACCTTATTCCGGCT
AGATCCGGCGGCCATGCCCTGCGCGCAGCCAACTGCAGATCTCACCTAGCCCTGCATCGT
CGATCCCTCCATCCATATCCATCCCTCCCTGCCTCCAATGCCGTGGGATAAATTTTTAGT
ATGCTCGCACTCCAGGACGCCATGGAGGACGCAGCTCCACCACTACCCCGACGCTATCTA
GGAGCATCCCAGATTCGGTCCATCCAAGCTCCCCGCCGCCTTGGTCTCCGCGAGGGCTGG
ATCTTGGCCATCGAAGAGGGAGGGATCGAAGAAGAAGATTGCTCTGCTCGGCTGCTGCTG
TTGCGATGATTGGGATGGTGGGTGCCGTGGTTTGTTTCAATTCCATCTACGTATGTTGCT
TGCCGAGCACCTTCACAAAAGAGAATCTCATCCTGTATGCAGATACTTTGTCCTACAGTG
ATAGATGAGTGTCATCAATAACCAAGTGTATGAAAGGCAAAACCATCATATGACAGATTG
TCAAATCCTGCATCCATCGTAGATGCATGAATGTTTCACTTTGTGTCAGAGCAGTAACCA
TGGAAATAGTTACCGGTTCAGCACCATTGAATAAAGAATTTTGAGCAGTTTTAACATGAA
AAAAAAAAAAAAAAA



Homology of Contig U35_19234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None