barSeed - Barley Seed Development Database

Probe CUST_4071_PI390587928

Source Contig U35_28785

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4071_PI390587928	Hv_44K_v2	TTGTTGTTCAGCGAGCCTATCAGAATCGAACTGATTGTCATCCGGCTTATTTGCGATGAG	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248142.1	2674	2e-24	1317 - 1376	100	60 / 60	plus	ABC05504 ABC07976 ABC08667 ABC08668
MLOC	AK374941	3368	2e-24	2075 - 2134	100	60 / 60	plus	ABC05504 ABC07976 ABC08667 ABC08668
MLOC	MLOC_16299.6	2622	2e-23	2317 - 2374	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.10	2780	2e-23	2227 - 2284	100	58 / 58	minus	ABC05504 ABC08667
MLOC	MLOC_16299.15	2483	2e-23	1930 - 1987	100	58 / 58	minus	ABC05504 ABC08667
MLOC	MLOC_16299.14	2555	2e-23	2233 - 2290	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.18	892	2e-23	340 - 397	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.17	1021	2e-23	480 - 537	100	58 / 58	minus	ABC05504 ABC08667
MLOC	MLOC_16299.3	1157	2e-23	605 - 662	100	58 / 58	minus	ABC05504 ABC08667
MLOC	MLOC_16299.4	2710	2e-23	2158 - 2215	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.8	1457	2e-23	904 - 961	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.11	1634	2e-23	1081 - 1138	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.12	2586	2e-23	2033 - 2090	100	58 / 58	minus	ABC05504 ABC08667
MLOC	MLOC_16299.5	2964	2e-23	2412 - 2469	100	58 / 58	minus	ABC05504 ABC08667 ABC08668
JLOC1	JLOC1_11222.8	1439	1e-23	496 - 553	100	58 / 58	plus
Harvest21	ABC27848	674	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_28785	674	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_28785 674 Hv_44K_v2
GCTCATCCCAGCAGCCTACGTGACCGTGAGGGCTGGGATTGCTCTGGGAGAGCTAACATC
GCTCAGCGACCTGTACGACACCCAGTCAGTAGCTCTGCTGTTCTTGATCGGCGTCGTCTC
AGTCACACCAGCATTGCCGAGGAAGGACGAGGTTCAAGAAAAGGCACCAGAAATCGCAGC
AGGCGCCTCATGAACACCAAAGAGGAGCCACCTAGCCACCTATACATACCAAGGCACAGC
ATGCGGCGGCTTCATTGGATTTGGGCCTACAGGCCTTGTGAGGCGGATGACACATGGTTT
GCTTGTTCACATGACAACACAGCACCACGGCGGGACCTTGGACCCTAAGTCCGCCCATCA
CCCGCCTGCCGGAGATCTGCGTCGCCATGGGAACACTGTATATTCATGTCATTTTCATGC
AGACCTTCATGATCCCAGGGACAATATTCATGTCATTGCTTGCTGGTGCCCTATTCGGGC
AACTCCGGGGCGTGGCTCTGGTTGTCTTTGCTGCCTCTGCTGGTGCTTCTTCCTGCTATT
TCCTATCAAAGCTGATTGGAAAACCGCTGGTGTTCGTGTTGTGGCCAGACAAACTCACCT
AATGTTTTTGTTGTTCAGCGAGCCTATCAGAATCGAACTGATTGTCATCCGGCTTATTTG
CGATGAGGCAACGC

Homology of Contig U35_28785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None