barSeed - Barley Seed Development Database

Probe CUST_38572_PI390587928

Source Contig U35_16034

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38572_PI390587928	Hv_44K_v2	TTGGGTGAATGTAACCAGACTTATACTTTCAGATTTTGTCATAGTTAATGGTGTGAGGAA	856	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26702.2	687	6e-24	593 - 651	100	59 / 59	plus	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC	MLOC_26702.1	1466	6e-24	1339 - 1397	100	59 / 59	plus	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
JLOC1	JLOC1_18121.2	710	3e-24	597 - 655	100	59 / 59	plus
JLOC1	JLOC1_18121.1	1452	3e-24	1339 - 1397	100	59 / 59	plus
Harvest21	ABC07219	978	3e-25	63 - 122	100	60 / 60	minus	ABC07219
Harvest35	U35_16034	976	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (976 bp)

>U35_16034 976 Hv_44K_v2
GGCCGCTGCGCCCCCGCGCCTCCCATCTTGCTTCTCAGTTCTCACTCCACTGCTGCCCTT
GTCTCGCGGTGCACGCGTCGCCGACGCCTGAGCTTCTCCTCACCGGGCCAGGTGCTGGGT
TCCTCCGCGACAGATCCATTATGTGCTAGCCAGGTCCAGATCGACGACGCCGAGGGAAAA
AATAATCCACTGCATGCCGACCGTCTCGCGGCACCGGCGCCAGAGCTCCCACCTCCCTTC
TCCTCGCCTGGATCCACAACCGAGTTCAAGCCGCGACCGAATCCATCCCGCGAGGGGTAC
CTAACCATTCTTGCAGAGTTCCTCAGGTACAATACTCTGACAGAGTACCTTCTTCAGAGT
GCAGAGGAGCAAAATTGTTCTAATCAGCAGCAGCACAACACAGCCACTTGGATCAGCACA
AGAGGAGCATCAGCAGCACGGGCACACGAGCAACAACAGCTAGTTCTTCAGGTGCAATGG
AAAATAAGCAAGCTTATATCTGAAAAATGAGTTAGCTAGGCTCAGAATTTTGAGTTGGCC
CCTTTACATAAGTTTTAGATAAAGTTTCAAGGTTTCTTTAGAGTATTTATTTGTGTCGTT
TGGATGTACGGTTTGAGAGCAGCTATCAGTTTAGTTTGCTGTGCCGAAATATATGTTCCT
GGGTACCGTATTTCGATATGGGAGATAAGGCCCTGTTAGAGGTGGTATTAAAATAAAGTT
ACAACATGAAAATTTTAGAGGCTGTTCTGTTGATACTTGAAACACATATCACTTGTCAGG
TTTCGTTCGGTATATTAAATCCTATGAAATTATCAAAGTGGGTTGTACTATGTTGGACAG
AATTTTATGTTTGGACTTGGGTGAATGTAACCAGACTTATACTTTCAGATTTTGTCATAG
TTAATGGTGTGAGGAACTTATAATGTGATAAAGTATATACGTTGTTGCACCATCTATATA
ATGTAATAAAGTATAT

Homology of Contig U35_16034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None