barSeed - Barley Seed Development Database

Probe CUST_38278_PI390587928

Source Contig U35_14149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38278_PI390587928	Hv_44K_v2	CATGTGGTTATGTATCTGTTTCTTTTTAATAAAAAGGGGTTTGCCCCGGCTCCATTTTTC	1721	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248225.1	1489	2e-24	1427 - 1486	100	60 / 60	plus	ABC01373 ABC01380 ABC01388 ABC17092
MLOC	AK248209.1	2246	2e-24	2184 - 2243	100	60 / 60	plus	ABC01373 ABC01380 ABC01388 ABC01633 ABC01634 ABC01642 ABC17092 ABC29482
MLOC	MLOC_77915.1	1783	3e-22	48 - 106	98	59 / 60	minus	ABC01373 ABC01380 ABC01388 ABC17092 ABC29482
JLOC1	JLOC1_51930.1	1866	1e-22	1678 - 1736	98	59 / 60	plus
Harvest21	ABC01380	1159	3e-25	1080 - 1139	100	60 / 60	plus	ABC01380
Harvest21	ABC01388	1082	5e-23	85 - 143	98	59 / 60	minus	ABC01388
Harvest21	ABC38877	129	2e-21	36 - 94	97	57 / 59	minus	ABC38877
Harvest35	U35_14149	1861	3e-25	1722 - 1781	100	60 / 60	plus

Contig Sequence (1861 bp)

>U35_14149 1861 Hv_44K_v2
CCACTACAAGGCACCAGCGCACACACCGTCGGTGTGACACCCCACCCCATCCCTTCTCCC
TCCCATCCATCCCCGGATTCCCTAGCGCGGAGCAGTAGCAGCAGCAGCTGAGCGCCGGCG
GCCATGGTGATCTCGCACGCGAGCTCCAGCGCGGGGGAGTCCGTCTACTCCACCTTCTCC
TCGCGCTACGTGCGCGAGGAGCTCCCGCGGTACCGGATGCCGGAGAACTCGATCCCCAAG
GAGGCGGCGTACCAGATCATCAGCGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAAC
CTGGCGTCCTTCGTCACCACCTGGATGGAGCCCGAGTGCGGCAAGCTCATCATGGACTCC
GTCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAGAACCGT
TGCGTAAACATGATAGCTCACTTGTTCAATGCACCGATCGGCGAGGACGAGACGGCTATC
GGAGTCTCGACGGTGGGGTCTTCGGAAGCAATCATGCTTGCGGGCCTGGCGTTCAAGAGG
AAGTGGGCGAACAAAATGAAGGAGCAGGGGAAGCCATGCGACAAACCTAACATTGTTACT
GGTGCAAATGTTCAGGTTTGCTGGGAGAAATTTGCTAGGTATTTTGAAGTGGAATTGAAG
GAGGTCAAGTTGACTGAAGGGTACTATGTCATGGATCCTAAGAAGGCTGTTGAAATGGTG
GATGAGAACACTATATGTGTCGCCGCCATCCTGGGTTCTACTCTCACTGGAGAGTACGAA
GATGTCAAACTGTTGAATGACCTTCTTGTGGAGAAGAACAAGGAAACAGGGTGGAACGTG
CCGATCCATGTCGATGCTGCTAGTGGAGGATTTATCGCTCCGTTTCTTCAGCCCGAGCTT
GAATGGGACTTCAGGCTGCCATTGGTGAAGAGCATCAACGTTAGTGGGCACAAGTATGGC
CTTGTGTACCCTGGTGTTGGATGGGTCATCTGGCGGAGCAAGGACGATTTGCCCGAAGAA
CTCATTTTCCACATAAACTATCTAGGAGCAGATCAGCCCACATTCACACTCAACTTCTCC
AAGGGTGCTAGCCAGATCATTGCGCAATACTATCAGCTGATCCGCCTCGGCTTCGAGGGG
TACAAGCACATCATGGAGAACTGCAAGCTGAACGCGGCGGTGCTGAAGGAGGGCATCGAC
GCGACGGGGCGGTTCGACGTGCTGTCCAAGGCGGACGGCGTGCCGCTGGTGGCCATCCGG
CTCAAGGACAGCACCAACTTCAGCGTGTTCGACATCTCGGAGAACCTGAGGCGGTTCGGC
TGGATCGTGCCGGCGTACACCATGCCCGCGGACGCGGAGCACGTGGCCGTGCTCCGCATA
GTCATCCGGGAGGACTTCAACCGGAGCCTCGCGCAGCGGCTCCTCGCCGACATCAACAAG
ATCATCGGCGAGCTGGACGCGCACGCCGTCCACGCCATCAAGCTCTCCACCGCCGCCGCT
GGTGGGGACGGCGCGAGTAAGAGCGCGGTCGACGCCGCCACCGAGGCCTTCAAGGACCTG
GCGGGGAAGAAGAAGGCCGGAGTATGCTGAAGGCTTGTTTGCTGAGACGCTTGCTCTGTC
CTTCATCACGTATTCACGTCTATGTTGTATCTTGGAGTACCATAATTATTTTGTACGTAC
GTACGCGGATTGCTTGCATTCTCTCTTTCGGCTCTGCTGGGCATGTGGTTATGTATCTGT
TTCTTTTTAATAAAAAGGGGTTTGCCCCGGCTCCATTTTTCTCCAAAAAAAAAAAAAAAA
AAAAAAAGGACACTTGGCTAGGAAATACGCTACTCTGTATAATATTGCGCGACGTAAAGA
A

Homology of Contig U35_14149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g36320.3	498	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g37830.1	500
Arabidopsis v10	AT5G17330.1	502	\| Symbols: GAD, GAD1 \| glutamate decarboxylase \| chr5:5711141-5714839 FORWARD LENGTH=502