barSeed - Barley Seed Development Database

Probe ABC01380

Source Contig ABC01380

barSeed

Links

Affymetrix Source Sequence (1159 bp)

>ABC01380 1159
TTGAAGTGGAATTGAAGGAGGTCACCGTTGACTGAAGGGTACTATGTCATGGATCCTAAG
AAGGCTGTTGAAATGGTGGATGAGAACACTATATGTGTCGCCGCCATCCTGGGATCTACT
CTCACTGGAGAGTACGAAGATGTCAAACTGTTGAATGACCTTCTTGTGGAGAAGAACAAG
GAAACAGGGTGGAACGTGCCGATCCATGTTGATGCTGCCAGCGGAGGATTTATCGCTCCG
TTTCTTCAGCCTGAGCTTGAATGGGACTTCAGGCTACCATTGGTGAAGAGCATCAACGTT
AGTGGGCACAAGTATGGCCTTGTGTACCCTGGTGTTGGATGGGTCATCTGGCGGAGCAAG
GACGATTTGCCCGAAGAACTCATTTTCCACATAAACTATCTAGGAGCAGATCAGCCCACA
TTCACGCTCAACTTCTCCAAGGGTGCTAGCCAGATCATCGCGCAATACTATCAGCTCATC
CGCCTCGGCTTCGAGGGGTACAAGCACATCATGGAGAACTGCAAGCTGAACGCGGCGGTG
CTGAAGGAGGGCATCGACGCGACGGGGCGGTTCGACGTGCTGTCCAAGGCGGACGGCGTG
CCGCTGGTGGCCATCCGGCTCAAGGACAGCACCAACTTCAGCGTGTTCGACATCTCGGAG
AACCTGAGGCGGTTCGGCTGGATCGTGCCGGCGTACACCATGCCCGCGGACGCGGAGCAC
GTGGCCGTGCTCCGCATAGTCATCCGGGAGGACTTCAACCGGAGCCTCGCGCAGCGGCTC
CTCGCCGACATCAACAAGATCATCGGCGAGCTGGACGCGCACGCCGTCCACGCCATCAAG
CTCTCCACCGCCGCCGCTGGTGGGGACGGCGCGAGTAAGAGCGCGGTCGACGCCGCCACC
GAGGCCTTCAAGGACCTGGCGGGGAAGAAGAAGGCCGGAGTATGCTGAAGGCTTGTTTGC
TGAGACGCTTGCTCTGTCCTTCATCACGTATTCACGTCTATGTTGTATCTTGGAGTACCA
TAATTATTTTGTACGTACGTACGCGGATTGCTTGCATTCTCTCTTTCGGCTCTGCTGGGC
ATGTGGTTATGTATCTGTTTCTTTTTAATAAAAAGGGGTTTGCCCCGGCTCCATTTTTCT
CCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_77915.1	1783	0.0	46 - 1184	99	1133 / 1141	CUST_38253_PI390587928 CUST_38278_PI390587928	ABC01373 ABC01380 ABC01388 ABC17092 ABC29482
AK248209.1	2246	0.0	1106 - 2246	99	1131 / 1142	CUST_38253_PI390587928 CUST_38278_PI390587928	ABC01373 ABC01380 ABC01388 ABC01633 ABC01634 ABC01642 ABC17092 ABC29482
MLOC_4544.2	1869	0.0	793 - 1629	86	724 / 838	None	ABC01373 ABC01380 ABC17092
MLOC_4544.3	1921	0.0	665 - 1501	86	724 / 838	CUST_14551_PI390587928	ABC01373 ABC01380 ABC17092
AK248225.1	1489	2e-165	1174 - 1489	100	316 / 316	CUST_38278_PI390587928 CUST_38253_PI390587928	ABC01373 ABC01380 ABC01388 ABC17092
MLOC_4544.1	1247	1e-163	788 - 1242	90	409 / 456	None	ABC01373 ABC01380 ABC17092