barSeed - Barley Seed Development Database

Probe ABC01373

Source Contig ABC01373

barSeed

Links

Affymetrix Source Sequence (1809 bp)

>ABC01373 1809
GCAAGCAGTTCCAGAGCCAAGAGCGAGTAGCAGCCAGCCATGGTGCTCTCCAGGGCCGCC
TCGGACACCGACGTGTCTGTTCACTCCACCTTCGCCTCCCGCTATGTCCGGTCGTCCCTC
CCGAGGTACCGCATGCCGGAGAACTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAAC
GACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTGGCGTCGTTCGTGACCACGTGG
ATGGAGCCCGAGTGCGACAAGCTCATCATGGCCTCCATCAACAAGAACTACGTCGACATG
GACGAGTACCCGGTCACCACCGAGCTCCAGAACCGGTGCGTGAACATGATCGCGCATCTC
TTCCACGCGCCGCTGGGCGAGTCGGAGACGGCCGTGGGCGTGGGCACGGTGGGGTCGTCG
GAGGCCATCATGCTGGCCGGGCTGGCCTTCAAGCGGAGGTGGCAGAACAAGCGCAAGGCA
GAGGGGAAACCGTTCGACAAGCCCAACATCATCACCGGCGCCAACGTCCAGGTCTGCTGG
GAGAAGTTCGCGAGGTACTTTGAGGTGGAGCTCAAGGAGGTGAAGCTGCGGGAGGGGTAC
TACGTGATGGACCCGGAGCAGGCGGTGGAGATGGTGGACGAGAACACCATCTGCGTGGCG
GCCATCCTCGGCTCCACGCTCAACGGCGAGTTCGAGGACGTCAAGCGCATCAACGACCTG
CTCGAAGACAAGAACAAGCAGACAGGGTGGGAGACGCCGATCCATGTGGACGCGGCGAGC
GGCGGGTTCATCGCGCCGTTCCTGTACCCGGAGCTGGAGTGGGACTTCCGGCTGCCGTGG
GTGAAGAGCATCAACGTGAGCGGCCACAAGTACGGCCTCGTCTACCCCGGCATCGGCTGG
TGCGTCTGGCGCAGCAAGGAGGACCTGCCCGACGAGCTCATCTTCCACATCAACTACCTC
GGCACCGACCAGCCCACCTTCACCCTCAACTTCTCCAAGGGCTCCAGCCAGGTGATCGCG
CAGTACTACCAGCTCATCCGCCACGGCTTCGAGGGGTACAGGAACATCATGGAGAACTGC
CAGGAGAACGCCATGGTGGTGAAGGAGGGACTGGAGAAGACGGGGCGCTTCAACATCGTG
TCCAAGGACGAGGGCGTGCCGCTGGTGGCCTTCTCGCTCAAGGACCACAGCCGCCACGAC
GAGTTCGAGATCTCCGACATGCTGCGCCGCTTCGGCTGGATCGTGCCGGCCTACACCATG
CCGGCCGACGCGCAGCACGTCACCGTGCTCCGCGTCGTCATCCGGGAGGAGTTCAGCCGC
ACCCTCGCCGAGCGCCTCGTCATCGACATCGACACCGTCATGGCCCAGCTCGACGTGCTC
CCCTCCAAGCTCACGCCCCCCGCCCTGGGGCTGCTGCCGGCCACGCTGCCCAAGACCGTC
GCCAAGAAGACGGAGCTCGAGACGCAGAAGTCCGTGGCGGCGGCATGGAAGGAGTTTGTG
CTCGCCAAGAAGACCAACGGCGTCTGCTAGTGCAAAATCAACAGCGTCCAAAATCCAAGC
TACCGATCCAATATAGTAGTACTATTATGATTCGAGTAAAACTGCTATTATAGGTTGATT
TATTAGGGGGAGTTTGTAACCAAAATTTTGCTGTGTCTTTTTAAGACTTGAGCTGTTGCG
CTGCAATGATAGCAAGTACTACTACAATTTTCTGTTAAATGGTTCCGCAAAATTATTTTC
TTCAGCTTCTGTAAATTTATTTTCTGAATAACATAATTATGGCGTTTTGTCTAAAAAAAA
AAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_63275.3	2095	0.0	1 - 1699	100	1699 / 1699	None	ABC01373 ABC01385 ABC17092
MLOC_63275.1	1965	0.0	1088 - 1834	100	747 / 747	CUST_24070_PI390587928 CUST_38287_PI390587928	ABC01373 ABC01385 ABC17092
MLOC_63275.2	2140	4e-60	1872 - 1998	100	127 / 127	CUST_38287_PI390587928	ABC01373 ABC01385 ABC17092
AK252731.1	1932	0.0	205 - 1522	90	1188 / 1322	CUST_38246_PI390587928	ABC01373 ABC01385 ABC17092
MLOC_64541.1	2296	0.0	553 - 1870	90	1186 / 1322	CUST_38246_PI390587928	ABC01373 ABC01385 ABC17092
MLOC_64541.2	1617	0.0	23 - 1291	90	1140 / 1273	None	ABC01373 ABC01385 ABC17092
MLOC_65790.1	1762	0.0	137 - 1416	85	1088 / 1285	None	ABC01373 ABC01385 ABC17092
AK365002	1735	0.0	152 - 1349	84	1012 / 1203	CUST_38283_PI390587928	ABC01373 ABC01385 ABC17092
AK248209.1	2246	0.0	629 - 1934	80	1048 / 1311	CUST_38253_PI390587928 CUST_38278_PI390587928	ABC01373 ABC01380 ABC01388 ABC01633 ABC01634 ABC01642 ABC17092 ABC29482
MLOC_77915.1	1783	0.0	356 - 1661	80	1048 / 1311	CUST_38253_PI390587928 CUST_38278_PI390587928	ABC01373 ABC01380 ABC01388 ABC17092 ABC29482
MLOC_73968.1	948	0.0	301 - 948	87	564 / 649	CUST_38283_PI390587928	ABC01373 ABC01385 ABC17092
MLOC_73968.2	917	0.0	267 - 917	87	565 / 652	CUST_38283_PI390587928	ABC01373 ABC01385 ABC17092
MLOC_4544.3	1921	0.0	190 - 1441	77	967 / 1257	CUST_14551_PI390587928	ABC01373 ABC01380 ABC17092
MLOC_4544.2	1869	0.0	357 - 1569	77	937 / 1217	None	ABC01373 ABC01380 ABC17092
AK248225.1	1489	0.0	313 - 1178	80	699 / 869	CUST_38253_PI390587928 CUST_38278_PI390587928	ABC01373 ABC01380 ABC01388 ABC17092
MLOC_4544.1	1247	1e-154	313 - 1224	78	710 / 915	None	ABC01373 ABC01380 ABC17092
MLOC_73442.2	761	2e-78	1 - 468	78	370 / 472	None	ABC01373 ABC01385