barSeed - Barley Seed Development Database

Probe CUST_38253_PI390587928

Source Contig U35_14152

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38253_PI390587928	Hv_44K_v2	GTTTGCTGGGAGAAATTTGCTAGGTATTTTGAAGTGGAATTGAAAGAGGTCAAGTTGACT	600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248225.1	1489	7e-23	762 - 821	98	59 / 60	plus	ABC01373 ABC01380 ABC01388 ABC17092
MLOC	AK248209.1	2246	7e-23	1078 - 1137	98	59 / 60	plus	ABC01373 ABC01380 ABC01388 ABC01633 ABC01634 ABC01642 ABC17092 ABC29482
MLOC	MLOC_77915.1	1783	7e-23	1153 - 1212	98	59 / 60	minus	ABC01373 ABC01380 ABC01388 ABC17092 ABC29482
JLOC1	JLOC1_51930.1	1866	4e-23	572 - 631	98	59 / 60	plus
Harvest21	ABC01378	660	3e-25	601 - 660	100	60 / 60	plus
Harvest21	ABC01376	1349	1e-23	616 - 675	98	59 / 60	plus
Harvest35	U35_14152	660	3e-25	601 - 660	100	60 / 60	plus
Harvest35	U35_14149	1861	1e-23	616 - 675	98	59 / 60	plus

Contig Sequence (660 bp)

>U35_14152 660 Hv_44K_v2
AGCACACCAACCTCCGCCTCCATTCACTCGCGGAGCACAGATTCCCGGCCGACTCGCCGT
CGCTGTCCCGGTGGTGCCCGCGACAGTGATCGGAGGACGATGGTGGTGACCGTGGCAGCG
ACGGGGCCGGACACGGCCGAGACGCTGCACTCCACCACCTTCGCCTCCCGCTACGTCCGC
GACCAGCTCCCCCGGTACCGGATGCCGGAGAACTCGATCCCCAAGGAGGCGGCGTACCAG
ATCATCAGCGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTGGCGTCCTTCGTC
ACCACCTGGATGGAGCCCGAGTGCGGCAAGCTCATCATGGACTCCGTCAACAAGAACTAC
GTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAGAACCGTTGCGTAAACATGATA
GCTCACTTGTTCAATGCACCGATCGGCGAGGACGAGACGGCTATCGGAGTCTCGACGGTG
GGGTCTTCGGAAGCAATCATGCTTGCGGGCCTGGCGTTCAAGAGGAAGTGGGCGAACAAA
ATGAAGGAGCAGGGGAAGCCATGCGACAAACCCTACATTGTTACTGGTGCAAATGTTCAG
GTTTGCTGGGAGAAATTTGCTAGGTATTTTGAAGTGGAATTGAAAGAGGTCAAGTTGACT

Homology of Contig U35_14152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g36320.2	502	3e-112	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g37830.1	500	1e-108
Arabidopsis v10	AT5G17330.1	502	4e-102	\| Symbols: GAD, GAD1 \| glutamate decarboxylase \| chr5:5711141-5714839 FORWARD LENGTH=502