- Probe CUST_38215_PI390587928
- Source Contig U35_14167
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38215_PI390587928 | Hv_44K_v2 | CCCCTTTGAACCCAAAAGCCAACAGAGAGAAGATGACCCAGATTATGTTTGAGACTTTCA | 510 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.678 | 0.877 | 2.987 | 3.028 | 0.907 | 0.701 |
| Raw | 245.627 | 493.663 | 1480.270 | 2359.900 | 257.466 | 214.684 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54382.2 | 3421 | 2e-24 | 1843 - 1902 | 100 | 60 / 60 | plus | ABC01389 ABC01390 ABC01391 ABC01394 ABC01397 ABC32893 ABC33336 |
| MLOC | MLOC_54382.1 | 1839 | 2e-24 | 805 - 864 | 100 | 60 / 60 | plus | ABC01389 ABC01390 ABC01391 ABC01394 ABC01397 ABC33336 |
| JLOC1 | JLOC1_35000.3 | 1801 | 8e-25 | 576 - 635 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35000.2 | 1592 | 8e-25 | 367 - 426 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35000.1 | 1619 | 8e-25 | 394 - 453 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01398 | 665 | 3e-25 | 441 - 500 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01396 | 850 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01390 | 1708 | 3e-25 | 511 - 570 | 100 | 60 / 60 | plus | ABC01390 |
| Harvest35 | U35_14172 | 1672 | 3e-25 | 502 - 561 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14167 | 570 | 3e-25 | 511 - 570 | 100 | 60 / 60 | plus |
Contig Sequence (570 bp)
>U35_14167 570 Hv_44K_v2 GAGAGATCCAGAGACCACCAGCGGCAGAGGACTGTCCAGCCACAGCGGCTGCAGTTATAG CCACCACCACCACCACCACCTTCCTCCCTCCCTCCCTCCCTCCGACTCCGATCCCATCTC CGTCCTCCCCTCCCGTTGCCTCCGCCTCCCCCGACCTCCCTCTCCGCGATATTCTGTAGG AAATGGCTGACGGTGAGGACATCCAGCCCCTTGTCTGCGACAATGGAACCGGAATGGTCA AGGCTGGTTTCGCTGGAGATGATGCGCCAAGGGCTGTCTTCCCTAGCATAGTTGGTCGCC CTCGGCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGG CGCAGTCCAAGAGAGGTATCCTCACGCTCAAGTACCCCATCGAGCACGGTATCGTAAGCA ACTGGGATGACATGGAGAAAATCTGGCATCACACTTTCTACAATGAGCTCCGTGTGGCAC CCGAGGAGCACCCTGTGTTGCTCACTGAGGCCCCTTTGAACCCAAAAGCCAACAGAGAGA AGATGACCCAGATTATGTTTGAGACTTTCA
Homology of Contig U35_14167 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g06390.4 | 378 | 2e-89 | protein|actin, putative, expressed |
| Brachypodium v1_2 | Bradi4g00260.1 | 378 | 7e-90 | |
| Arabidopsis v10 | AT5G09810.1 | 377 | 6e-90 | | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377 |