barSeed - Barley Seed Development Database

Probe CUST_38189_PI390587928

Source Contig U35_14172

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38189_PI390587928	Hv_44K_v2	AAACTTGGGTTGGCTTGATTTGTTGTTGGGAATTGTCTGTAATAGCTCATGGTTTTTGCT	1525	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54382.2	3421	2e-24	3254 - 3313	100	60 / 60	plus	ABC01389 ABC01390 ABC01391 ABC01394 ABC01397 ABC32893 ABC33336
JLOC1	JLOC1_35000.3	1801	8e-25	1600 - 1659	100	60 / 60	plus
JLOC1	JLOC1_35000.2	1592	8e-25	1391 - 1450	100	60 / 60	plus
JLOC1	JLOC1_35000.1	1619	8e-25	1418 - 1477	100	60 / 60	plus
Harvest21	ABC01390	1708	3e-25	1535 - 1594	100	60 / 60	plus	ABC01390
Harvest21	ABC33336	245	2e-22	18 - 72	100	55 / 55	minus	ABC33336
Harvest35	U35_14172	1672	3e-25	1526 - 1585	100	60 / 60	plus
Harvest35	U35_49554	500	1e-23	354 - 413	98	59 / 60	plus
Harvest35	U35_50762	755	2e-22	82 - 139	98	57 / 58	minus

Contig Sequence (1672 bp)

>U35_14172 1672 Hv_44K_v2
GGCGAGATCCAGAGACCACCAGCGGCAGAGGACTGTCCAGCCACAGCGGCTGCAGTTATA
GCCACCACCACCACCACCACCTTCCTCCCTCCCTCCCTCCGATCCCATCTCCGTCCTCCC
CTCCCGTCGCCTCCGCCTCCCCCGACCTCCCTCTCCGCGATATTCTGTAGGAAATGGCTG
ACGGTGAGGACATCCAGCCCCTTGTCTGCGACAATGGAACCGGAATGGTCAAGGCTGGTT
TCGCTGGAGATGATGCGCCAAGGGCTGTCTTCCCTAGCATAGTTGGTCGCCCTCGGCACA
CTGGTGTCATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGGCGCAGTCCA
AGAGAGGTATCCTCACGCTCAAGTACCCCATCGAGCACGGTATCGTAAGCAACTGGGATG
ACATGGAGAAAATCTGGCATCACACTTTCTACAATGAGCTCCGTGTGGCACCCGAGGAGC
ACCCTGTGTTGCTCACTGAGGCCCCTTTGAACCCAAAAGCCAACAGAGAGAAGATGACCC
AGATTATGTTTGAGACTTTCAATGTTCCTGCCATGTACGTCGCTATTCAGGCCGTGCTTT
CCCTCTATGCAAGTGGTCGTACTACTGGTATCGTTCTCGACTCTGGTGATGGTGTCAGCC
ACACCGTGCCCATTTATGAAGGATACGCGCTTCCCCATGCCATTCTTCGTTTGGATCTCG
CTGGTCGGGATCTCACGGACTCCCTTATGAAGATCCTCACCGAGAGAGGTTACTCCTTCA
CAACCTCAGCTGAGCGGGAAATTGTAAGGGACATCAAGGAGAAGCTTGCGTACGTTGCCC
TTGATTATGAACAGGAGCTGGAGACTGCCAAGAACAGCTCCTCAGTTGAGAAGAGCTACG
AGCTTCCTGATGGTCAGGTGATCACGATTGGCGCAGAGAGGTTCAGGTGCCCTGAGGTCC
TCTTCCAGCCATCCATGATCGGCATGGAGTCTTCTGGAATCCACGAGACGACCTACAACT
CCATCATGAAGTGTGACGTGGATATCAGGAAGGACTTGTATGGAAACATCGTGCTCAGTG
GTGGCACAACTATGTTCCCAGGTATCGCTGACCGTATGAGCAAGGAGATCACCGCCCTTG
CTCCGAGCAGCATGAAGATCAAGGTCGTCGCTCCACCTGAGAGGAAGTACAGTGTCTGGA
TCGGAGGGTCCATCCTAGCCTCACTCAGCACTTTCCAACAGATGTGGATATCCAAGGATG
AGTACGACGAGTCTGGCCCAGCGATCGTCCACAGGAAGTGCTTCTGATCTCCACGAGCGC
TCCACTGCTGTTATCATCTAGTCTTCGGTTATGTTTGGTTCATTCTTCTAGAAATGTATT
GCGTATTTGCAAGCTATGTTTTTTTCCAGACGTGACGTGGGTACTCTCGGGATACGCCAC
CTATATACGTGGCGGCTCCATGGTGCAAGTGCAAGTACACTATCTATGTTTGTGCATTGT
CAGTGTGTTTGTGGGATCAGTTGTCAAACTTGGGTTGGCTTGATTTGTTGTTGGGAATTG
TCTGTAATAGCTCATGGTTTTTGCTATGTATTTTTATATCTTACTAAAAAAAAAAAAAAA
AAATCATGGTAAATTATGGATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14172 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g01600.1	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi2g39590.1	378
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377