barSeed - Barley Seed Development Database

Probe CUST_38188_PI390587928

Source Contig U35_14173

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38188_PI390587928	Hv_44K_v2	AGTTTTTTGTGTGAGCCCCATAATCATTTCCTTGTGTACATTCACTTCTGCGATAAAAAA	1566	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.072	1.420	1.489	1.252	0.598	0.688
Raw	1480.673	3063.136	2813.863	3687.690	631.204	780.618

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13146.4	1639	9e-22	1566 - 1620	100	55 / 55	plus	ABC01390 ABC01394 ABC01397
JLOC1	JLOC1_8866.3	1267	5e-22	1069 - 1123	100	55 / 55	plus
JLOC1	JLOC1_8866.1	1800	5e-22	1602 - 1656	100	55 / 55	plus
Harvest21	ABC47430	530	2e-22	50 - 104	100	55 / 55	minus
Harvest21	ABC01394	1640	2e-22	1550 - 1604	100	55 / 55	plus	ABC01394
Harvest35	U35_14173	1673	3e-25	1567 - 1626	100	60 / 60	plus

Contig Sequence (1673 bp)

>U35_14173 1673 Hv_44K_v2
GCTTGGTTCTCCTGCCTCTGCCTAGTTCGCCGCCACCGCCGCCACCCACCCCCTCATCCT
CTTCGTCCGCTCTTTGCAGTGTCCGCTCATCTCGGCGGGAGGTCCTCAGGCGGGCAGGTT
CCCCTAGATCCCCGGAGTCACTTAATCAAATGGCTGACGGTGAGGACATCCAGCCCCTTG
TCTGCGACAATGGAACTGGCATGGTCAAGGCTGGTTTTGCAGGGGATGATGCGCCAAGGG
CTGTCTTCCCAAGTATCGTTGGGCGCCCCCGCCACACTGGTGTGATGGTGGGGATGGGGC
AGAAAGATGCATATGTTGGTGACGAGGCCCAATCCAAGAGGGGTATCCTCACCTTGAAGT
ACCCGATCGAGCATGGTATCGTCAGCAACTGGGACGATATGGAGAAGATCTGGCATCACA
CTTTCTACAATGAGCTCCGTGTTGCACCTGAGGAGCACCCAGTATTGCTGACTGAGGCAC
CCCTGAACCCCAAGGCTAACAGGGAGAAGATGACACAAATCATGTTTGAGACCTTTAATG
TTCCAGCCATGTATGTGGCCATCCAGGCAGTGCTTTCCCTATATGCTAGTGGACGCACAA
CAGGTATCGTGTTGGATTCTGGTGATGGTGTCAGCCATACTGTGCCAATCTATGAAGGAT
ATGCCCTTCCACATGCCATCCTTCGTCTTGACCTCGCTGGGCGTGACCTAACTGACTGTT
TGATGAAGATTCTTACGGAGAGAGGTTACTCCTTCACCACGACTGCCGAACGGGAAATTG
TAAGGGATATTAAGGAGAAGCTCGCATATGTGGCTCTTGACTATGAACAAGAGCTGGAAA
ATGCCAAGAGCAGCTCCTCTGTGGAGAAGAGCTATGAGCTGCCTGATGGGCAGGTGATCA
CCATTGGGGCAGAGAGGTTCCGTTGCCCTGAGGTCCTTTTCCAGCCATCTTTCATTGGTA
TGGAAGCTGCTGGAATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTGGATA
TCAGGAAGGACCTGTATGGTAACATTGTGCTCAGTGGTGGGTCAACTATGTTCCCGGGTA
TTGCTGACCGTATGAGCAAGGAGATCACTGCCCTTGCACCAAGCAGCATGAAGATCAAGG
TGGTGGCACCGCCTGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCGATTCTTGCCTCAC
TTAGTACCTTCCAACAGATGTGGATCTCGAAGGGTGAGTACGATGAGTCAGGTCCAGCGA
TTGTCCACCGGAAGTGCTTCTAAGTTGCGAGTTGTCTGGGTCTTCTGAATCTATTCTGGC
TGTTCTTTTCTCAAGTCCTTGCCATGTAAGCTACTATGTTTGAGATTGCTGGGATTCTGT
TGACTGTATTGCCGGATTAATTTGTTGGATCAAGATTGCGTACCTTGTAGACTCGTAATA
TGTTCAGTGGGCTGCTATATTTGATCGGTGCTGAATCATATGTCGCATGTTCCTGGGTTT
TTTTCATGCCAAAAGGTTTGGTGCTAGCGTGGGGGGAGTGTCAAAATATCTACCAGTCTT
TGTAAGAGTTTTTTGTGTGAGCCCCATAATCATTTCCTTGTGTACATTCACTTCTGCGAT
AAAAAAAAATCTTTTGGGTTGCGAATTTGGTTCATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g06390.4	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi4g41850.1	378
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377