barSeed - Barley Seed Development Database

Probe CUST_38102_PI390587928

Source Contig U35_28621

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38102_PI390587928	Hv_44K_v2	TTGGATACATACAATTGGTTTCTGATATGGAAATGCTCATTATGCTAGTGCTAGGGTGGA	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354728	2811	2e-24	2256 - 2315	100	60 / 60	plus	ABC01285 ABC01287 ABC01302 ABC02379
MLOC	MLOC_9250.1	1486	2e-24	1251 - 1310	100	60 / 60	plus	ABC01285 ABC01302
JLOC1	JLOC1_6056.2	1488	8e-25	1251 - 1310	100	60 / 60	plus
Harvest21	ABC27598	765	3e-25	703 - 762	100	60 / 60	plus
Harvest35	U35_28621	765	3e-25	703 - 762	100	60 / 60	plus

Contig Sequence (765 bp)

>U35_28621 765 Hv_44K_v2
TGCAGGAATTCGCACCGGGTTGGTTCAGCTTTCAACTTACACCTGNAACCAAGTATATTA
ATCTAGAGTCGCTCTATTTAATACTTCACCACGCCTTCCATGAATCATGATGTGCTACCC
CTTATTTGCAATCTTAAAAAATAATTGTGCACCTAGCCATTAGCAGGCACTTCCTGCAAA
CTTTCAGTAAAGCTATGTTTACTAAAAAATCAAATAGCTCCTATCTGATTTTACTGATGT
TTTCTTCTACATGTGAATGGTTTCTAGAGTGTGCTGATTGAGCCAACCAGTGGCAACACA
GACATTGGGCTGGCCTTCATGGCTGCTGTCAAGGGTTACAGACTTGTACTCACGATGCCC
GCCTCCATGAGTATGGAGAGGAGAATCATCCTGAAGGCTTTTGGTGCTGAGCTAATCCTC
ACAGACCCACTTTTGGGAATGAAAGGAGCTATATCATTCAAAAGTTGTATTGAGCAGTTT
TTACAATGTACACCACCCTAATTAATATTTCTCCGGGTGAAGGCATGCACTTTTACATTC
AATCCCCTGTTCAATTCGCGCATCTATTTAATTGTGCAACTAAATGATGATTTCATACAT
TCCAATTAATATTTGTGTGTTCACAAAAGCTAGTCCCAGTGAACATTTTGAATCCAGTGC
AGTTTCTCATGATGAGAATGATGAAATCATGCTTCTTCTTTTTTGGATACATACAATTGG
TTTCTGATATGGAAATGCTCATTATGCTAGTGCTAGGGTGGATGA

Homology of Contig U35_28621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None